HHsearch alignment for GI: 254780349 and conserved domain: TIGR01328
>TIGR01328 met_gam_lyase methionine gamma-lyase; InterPro: IPR006237 This family of sequences is a methionine gamma-lyase subset of a family of PLP-dependent trans-sulphuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine..
Probab=99.11 E-value=1.7e-09 Score=86.61 Aligned_cols=222 Identities=19% Similarity=0.235 Sum_probs=158.6
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00679999999999999871886301000016799999999831548748812334484111476654333332201366
Q gi|254780349|r 73 GCQYVDDIENIAIERAKKLFNVNFVNVQSHSGSQMNQGVFLALMHPGDSFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYN 152 (433)
Q Consensus 73 G~~~~d~iE~la~~~a~~lF~a~~anvqp~SG~~An~av~~ALl~pGD~Il~~~l~~GGHlshg~~~~~~g~~~~~~~y~ 152 (433)
T Consensus 57 gNPTv~~LE~----riA~LEg~EAa-vAt~SGMgAi~A~l~~~lkAgDh~i~d~~lYGC--------Tfall~~~ltkfg 123 (392)
T TIGR01328 57 GNPTVDLLER----RIAELEGAEAA-VATASGMGAIAATLLSLLKAGDHVISDETLYGC--------TFALLEDALTKFG 123 (392)
T ss_pred CCCHHHHHHH----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC--------HHHHHHHHHHHHC
T ss_conf 7713778888----98754204677-887512899999999998528757743874201--------4899873267737
Q ss_pred CCCCCCCCCHHHHHHHHHHHCC--CEEEEECCCCC--CCCCHHHHHHHHHHCC-CEEEECCCCHHHHHHHHCCCCCCCC-
Q ss_conf 5832356598999999986046--67897055243--5363799998864179-7899186201244320001232200-
Q gi|254780349|r 153 VRKEDGLLDMHEIESLAIEYNP--KLIIVGGTAYS--RVWDWERFRSIADSIG-AYLMADISHISGLVVGGQHPSPVPH- 226 (433)
Q Consensus 153 ~d~~~~~ID~d~~~~~a~~~kP--klIi~G~S~y~--~~~d~~~l~eIa~~~g-a~l~~D~aH~~GLIa~g~~~~Pl~~- 226 (433)
T Consensus 124 i~v~--f~~~~~pee~~a~i~dnT~ivYfETPaNPtm~liD~e~v~r~A~~~gG~kVivDNTf-----atP~lt~P~alG 196 (392)
T TIGR01328 124 IDVK--FVDMASPEEVKAAIKDNTKIVYFETPANPTMKLIDLELVVRVAHEKGGVKVIVDNTF-----ATPYLTRPVALG 196 (392)
T ss_pred CEEE--EECCCCHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC-----CCHHHCCHHHCC
T ss_conf 5279--831787799998448997799986599875257759999999975298289985662-----770013803618
Q ss_pred CCEEEECCCCCCCCCC---CEEEEECCCCHHHHCCHHH---CHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 2356740456522567---4489833620565016646---543223445566689999999973564899999999888
Q gi|254780349|r 227 CHIVTTTTHKSLRGPR---GGLIMTNHADLAKKINSAI---FPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNS 300 (433)
Q Consensus 227 ADvvt~sTHKtl~GPr---gGiI~~~~~e~~~~i~~av---fPg~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA 300 (433)
T Consensus 197 ~D~VVHSATKYigGHgDvVaG~~~G~~-e~~q~iR~~g~KD~tG~ViSPfdAwL~lRG------Lk-TL~~RM~rhsenA 268 (392)
T TIGR01328 197 VDVVVHSATKYIGGHGDVVAGVLIGDA-ELLQRIRLVGVKDMTGAVISPFDAWLVLRG------LK-TLAVRMKRHSENA 268 (392)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCEECHHHHHHHHHH------HH-HHHHHHHHHHHHH
T ss_conf 776894241213761221122110775-667440111100056650055789999743------66-7778887730538
Q ss_pred HHHHHHHHHCC--CCCCCCCCCCC
Q ss_conf 99999986168--52334588898
Q gi|254780349|r 301 QALAKKLQFLG--FDIVSGGTDNH 322 (433)
Q Consensus 301 ~~La~~L~~~G--~~vv~ggTd~H 322 (433)
T Consensus 269 ~kvAe~Lk~HPaVe~V~YPG~~~h 292 (392)
T TIGR01328 269 EKVAEYLKEHPAVEKVYYPGLEEH 292 (392)
T ss_pred HHHHHHHHCCCCCCEEECCCCCCC
T ss_conf 999998523886021236887788