HHsearch alignment for GI: 254780349 and conserved domain: TIGR03246
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=98.75 E-value=1.6e-05 Score=58.98 Aligned_cols=270 Identities=15% Similarity=0.175 Sum_probs=133.9
Q ss_pred CHHHHHHHHHHHHHHH-------C-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC---CHHHHHHH
Q ss_conf 0016799999999831-------5-4874881233448411147665433333220136-658323565---98999999
Q gi|254780349|r 101 SHSGSQMNQGVFLALM-------H-PGDSFMGLSLDSGGHLTHGSSVNMSGKWFKAIPY-NVRKEDGLL---DMHEIESL 168 (433)
Q Consensus 101 p~SG~~An~av~~ALl-------~-pGD~Il~~~l~~GGHlshg~~~~~~g~~~~~~~y-~~d~~~~~I---D~d~~~~~ 168 (433)
T Consensus 98 ~~sGsEA~e~AlklAr~~~~~~~~~~k~~iis~~~~yHG~t--~~~~s~~~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~ 175 (397)
T TIGR03246 98 CNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRT--LFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKAL 175 (397)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHH
T ss_conf 28677899999999999998517999768999727868985--6410468996556788899976420452339999985
Q ss_pred HHHHCCCEEEEE------CCCCCCCCCHHHHHHHHHHCCCEEEECCCCHHHH-HHHHCCCCC-CCC-CCEEEECCCCCCC
Q ss_conf 986046678970------5524353637999988641797899186201244-320001232-200-2356740456522
Q gi|254780349|r 169 AIEYNPKLIIVG------GTAYSRVWDWERFRSIADSIGAYLMADISHISGL-VVGGQHPSP-VPH-CHIVTTTTHKSLR 239 (433)
Q Consensus 169 a~~~kPklIi~G------~S~y~~~~d~~~l~eIa~~~ga~l~~D~aH~~GL-Ia~g~~~~P-l~~-ADvvt~sTHKtl~ 239 (433)
T Consensus 176 ~~~-~iaAvi~EPv~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~t-GfGRtG~~~a~~~~gv~PDiv~~--gK~l~ 251 (397)
T TIGR03246 176 ISD-KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQT-GVGRTGELYAYMHYGVTPDILTS--AKALG 251 (397)
T ss_pred HCC-CEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEE-CCCCCCCCCHHHCCCCCCCEEEE--CCCCC
T ss_conf 288-737999938778889873888999999999998593586341220-78777783143226989987887--42246
Q ss_pred C--CCCEEEEECCCCHHHHCCHHHCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC--CCCCC
Q ss_conf 5--6744898336205650166465432234455666899999999735648999999998889999998616--85233
Q gi|254780349|r 240 G--PRGGLIMTNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFL--GFDIV 315 (433)
Q Consensus 240 G--PrgGiI~~~~~e~~~~i~~avfPg~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~--G~~vv 315 (433)
T Consensus 252 gG~P~sav~~~-~-~i~~~~~~~~h~~T~~gnpl~~aaala~L--~~i~~--e~l~~~~~~~g~~l~~~L~~l~~~~~~i 325 (397)
T TIGR03246 252 GGFPIGAMLTT-T-EIAAHLKVGTHGTTYGGNPLACAVAGKVL--DLVNT--PELLAGVKQRHDLFVDGLEKINARYNVF 325 (397)
T ss_pred CCCEEEEEEEC-H-HHHHHCCCCCCCCCCCCCHHHHHHHHHHH--HHHHH--CCHHHHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 88404899744-8-88865187773866882999999999999--99985--4799999999999999999987417987
Q ss_pred CCCCCCCEEE-ECCCCC-CCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 4588898126-316655-67679999988856718803789989999888985122466673079998999999999999
Q gi|254780349|r 316 SGGTDNHLML-VDLRSK-RMTGKRAESILGRVSITCNKNSIPFDPESPFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQ 393 (433)
Q Consensus 316 ~ggTd~H~vl-vdl~~~-~~~G~~a~~~Le~~gI~~Nkn~iP~D~~~~~~~sGiRlGT~aiTtrG~~e~em~~iA~li~~ 393 (433)
T Consensus 326 ~~VRG~Glm~giel~~~~~~~a~~i~~~~~~~Gll~~~~g----------~n~lrl~-PPL~---it~eeid~~l~~l~~ 391 (397)
T TIGR03246 326 SEIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIAG----------PNVVRFA-PSLV---ISDDDIDEGLARFER 391 (397)
T ss_pred EEEEECCEEEEEEECCCCCCHHHHHHHHHHHCCCEEEECC----------CCEEEEE-CCCC---CCHHHHHHHHHHHHH
T ss_conf 7542243599999727863359999999997892893079----------9979997-8851---899999999999999
Q ss_pred HHH
Q ss_conf 960
Q gi|254780349|r 394 ILD 396 (433)
Q Consensus 394 ~L~ 396 (433)
T Consensus 392 al~ 394 (397)
T TIGR03246 392 AIE 394 (397)
T ss_pred HHH
T ss_conf 999