HHsearch alignment for GI: 254780349 and conserved domain: TIGR03402
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.84 E-value=4e-18 Score=146.64 Aligned_cols=333 Identities=18% Similarity=0.234 Sum_probs=210.3
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCHHH-HHHHHHHHHHH---
Q ss_conf 43010298999983051028865798887533600679999999999999871886301000016-79999999983---
Q gi|254780349|r 40 ASENIVSRAVLEAQGSILTNKYAEGYPSKRYYGGCQYVDDIENIAIERAKKLFNVNFVNVQSHSG-SQMNQGVFLAL--- 115 (433)
Q Consensus 40 ASEN~~S~~v~~~l~S~l~nkyaeG~pg~ryy~G~~~~d~iE~la~~~a~~lF~a~~anvqp~SG-~~An~av~~AL--- 115 (433)
T Consensus 6 AAtt~~~~~V~~a~~~~~~~~~~n--p~~~h~~~~~-a~~~~e~aR~~iA~~lga~~~eIvFt~~~T~a~n~~i~~~~~~ 82 (379)
T TIGR03402 6 NATTRVDPEVLEAMLPYFTEYFGN--PSSMHSFGGE-VGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAA 82 (379)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCC--CCCCCHHHHH-HHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHH
T ss_conf 665889999999999999965899--7765899999-9999999999999982999673999288799999999999986
Q ss_pred HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEC--CCCCCCCCHHHH
Q ss_conf 154874881233448411147665433333220136658323565989999999860466789705--524353637999
Q gi|254780349|r 116 MHPGDSFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVGG--TAYSRVWDWERF 193 (433)
Q Consensus 116 l~pGD~Il~~~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPklIi~G~--S~y~~~~d~~~l 193 (433)
T Consensus 83 ~~~~d~Ii~s~~eH~a~~~--~~~~l~~~g~~v~~~~~~~-~g~id~~~l~~~l-~~~T~lvs~~~~sn~tG~i~pv~~I 158 (379)
T TIGR03402 83 QPEKRHIITTAVEHPAVLS--LCQHLEKQGYKVTYLPVDE-EGRLDLEELRAAI-TDDTALVSVMWANNETGTIFPIEEI 158 (379)
T ss_pred CCCCCEEEEECCHHHHHHH--HHHHHHHCCCEEEEEECCC-CCCCCHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHH
T ss_conf 7999999980131045667--9999996598899970378-9826426678872-6786289961257888701789999
Q ss_pred HHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCC----CCEEEECCCCCCCCCCC-EEEEECCCCHHHHCCHHHCHHH---
Q ss_conf 988641797899186201244320001232200----23567404565225674-4898336205650166465432---
Q gi|254780349|r 194 RSIADSIGAYLMADISHISGLVVGGQHPSPVPH----CHIVTTTTHKSLRGPRG-GLIMTNHADLAKKINSAIFPGL--- 265 (433)
Q Consensus 194 ~eIa~~~ga~l~~D~aH~~GLIa~g~~~~Pl~~----ADvvt~sTHKtl~GPrg-GiI~~~~~e~~~~i~~avfPg~--- 265 (433)
T Consensus 159 ~~~~~~~g~~~~vDa~Q~~g~~-------pidv~~~~~D~~~~S~hK-~~GP~G~G~Ly~r~~-~--~~~P~~~Gg~~e~ 227 (379)
T TIGR03402 159 GEIAKERGALFHTDAVQAVGKI-------PIDLKEMNIDMLSLSGHK-LHGPKGVGALYIRKG-T--RFRPLLRGGHQER 227 (379)
T ss_pred HHHHHHCCCEEEEECCCCCCCC-------CCCHHHHCCCCEECCHHH-CCCCCCEEEEEECCC-C--CCCCCCCCCCCCC
T ss_conf 9999763988994531124664-------640344157721202111-368872599998267-6--6687678888777
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCEE-EECCCCCCCCHHHHH
Q ss_conf ---234455666899999999735648999999998889999998616--85233458889812-631665567679999
Q gi|254780349|r 266 ---QGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFL--GFDIVSGGTDNHLM-LVDLRSKRMTGKRAE 339 (433)
Q Consensus 266 ---qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~--G~~vv~ggTd~H~v-lvdl~~~~~~G~~a~ 339 (433)
T Consensus 228 ~~~~GT~n~~~i~gl~~a~~~~~-~~~~~~~~~~~~l~~~l~~~ll~~~~~~~i~g-~~~~r~p~~~~~~~~~~~~~~i~ 305 (379)
T TIGR03402 228 GRRAGTENVPGIVGLGKAAELAT-EHLEEENTRVRALRDRLEAGLLARIPDARLNG-DPTKRLPNTVNISFEYIEGEAIL 305 (379)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC-CHHHCCCCCEEECCCCCCHHHHH
T ss_conf 76789712999999999999999-75999999999999999999985089827547-86664887303236998999999
Q ss_pred HHHHHCCEEEEC--CCCCCCCCC-----------CCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 988856718803--789989999-----------888985122466673079998999999999999960
Q gi|254780349|r 340 SILGRVSITCNK--NSIPFDPES-----------PFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQILD 396 (433)
Q Consensus 340 ~~Le~~gI~~Nk--n~iP~D~~~-----------~~~~sGiRlGT~aiTtrG~~e~em~~iA~li~~~L~ 396 (433)
T Consensus 306 ~~L~~~gI~v~~G~~Ca~~~~~ps~vL~a~g~~~~~~~g~iRvS~~~ynT----~edId~li~aL~~iv~ 371 (379)
T TIGR03402 306 LLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNT----EEDIDYVLEVLPPIIA 371 (379)
T ss_pred HHHCCCCEEEECCHHCCCCCCCHHHHHHHCCCCHHHCCCEEEEECCCCCC----HHHHHHHHHHHHHHHH
T ss_conf 98451892997503215999862499997599833339569997389999----9999999999999999