HHsearch alignment for GI: 254780349 and conserved domain: TIGR03403
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PMID:11123951), so we use this designation.
Probab=99.81 E-value=6.7e-17 Score=138.17 Aligned_cols=332 Identities=16% Similarity=0.215 Sum_probs=215.6
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-EECCCHHH-HHHHHHHHHHH--
Q ss_conf 430102989999830510288657988875336006799999999999998718863-01000016-79999999983--
Q gi|254780349|r 40 ASENIVSRAVLEAQGSILTNKYAEGYPSKRYYGGCQYVDDIENIAIERAKKLFNVNF-VNVQSHSG-SQMNQGVFLAL-- 115 (433)
Q Consensus 40 ASEN~~S~~v~~~l~S~l~nkyaeG~pg~ryy~G~~~~d~iE~la~~~a~~lF~a~~-anvqp~SG-~~An~av~~AL-- 115 (433)
T Consensus 6 aAtt~~~~~Vi~~~~~~~~~~~~--Np~s~h~~~~~a~~~~-e~aR~~ia~~l~a~~~~eIvFTsg~Tea~N~~~~gl~~ 82 (382)
T TIGR03403 6 NATTMLDPKVKELMDPFFCDIYG--NPNSLHQFGTATHPAI-AEALDKLYKGINARDLDDIIITSCATESNNWVLKGVYF 82 (382)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 35689999999999999986689--9632539999999999-99999999975969978699938758999999999999
Q ss_pred ---H-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEC-C-CCCCCCC
Q ss_conf ---1-54874881233448411147665433333220136658323565989999999860466789705-5-2435363
Q gi|254780349|r 116 ---M-HPGDSFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVGG-T-AYSRVWD 189 (433)
Q Consensus 116 ---l-~pGD~Il~~~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPklIi~G~-S-~y~~~~d 189 (433)
T Consensus 83 ~~~~~~~~~~ii~s~~EH~sv~~--~~~~l~~~G~~v~~~~~d~-~G~~d~~~l~~~l~-~~T~LVai~~anN~tG~i~p 158 (382)
T TIGR03403 83 DEILKGGKNHIITTEVEHPAVRA--TCAFLESLGVEVTYLPINE-QGTITAEQVREAIT-EKTALVSVMWANNETGMIFP 158 (382)
T ss_pred HHHHCCCCCEEEEECCCCHHHHH--HHHHHHHCCCEEEEECCCC-CCCCCHHHHHHHCC-CCCCEEEEECCCCCCCCCCC
T ss_conf 98636899999995565153899--9999996597899977599-98588999997601-46606776314767777787
Q ss_pred HHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCC--CCEEEECCCCCCCCCCC-EEEEECCCCHHHHCCHHHCH---
Q ss_conf 7999988641797899186201244320001232200--23567404565225674-48983362056501664654---
Q gi|254780349|r 190 WERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPH--CHIVTTTTHKSLRGPRG-GLIMTNHADLAKKINSAIFP--- 263 (433)
Q Consensus 190 ~~~l~eIa~~~ga~l~~D~aH~~GLIa~g~~~~Pl~~--ADvvt~sTHKtl~GPrg-GiI~~~~~e~~~~i~~avfP--- 263 (433)
T Consensus 159 v~~I~~~~~~~g~~~~vDa~Q~~g~~-----pidv~~l~~D~l~~S~HK-~~GP~GiG~L~ir~~-~--~l~P-~~~Gg~ 228 (382)
T TIGR03403 159 IKEIGEICKERGVLFHTDAVQAIGKI-----PVDVQKAGVDFLSFSAHK-FHGPKGVGGLYIRKG-V--ELTP-LFHGGE 228 (382)
T ss_pred HHHHHHHHHHCCCEEEEEHHHHCCCC-----CCCCCCCCCCEEEEEHHH-CCCCCCEEEEEECCC-C--CCCC-CCCCCC
T ss_conf 99999999872987996713413564-----643232346524531010-368883499998677-7--6587-658987
Q ss_pred ---HH-HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCC---CEEEECCCCCCCCH
Q ss_conf ---32-234455666899999999735648999999998889999998616-85233458889---81263166556767
Q gi|254780349|r 264 ---GL-QGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFL-GFDIVSGGTDN---HLMLVDLRSKRMTG 335 (433)
Q Consensus 264 ---g~-qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~-G~~vv~ggTd~---H~vlvdl~~~~~~G 335 (433)
T Consensus 229 ~~~~~r~GT~n~~~i~~l~~A~~~~~-~~~~~~~~~~~~L~~~l~~~L~~i~~~~i~g-~~~~r~p~~~~~~--~~~i~~ 304 (382)
T TIGR03403 229 HMGGRRSGTLNVPYIVAMGEAMRLAN-EYLDFEKSHVRRLRDRLEDALLELPDVFVVG-DREHRVPNTILIS--IKGVEG 304 (382)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC-CHHHCCCCEEEEE--CCCCCH
T ss_conf 74761279867889999999999999-9899999999999999999998177946716-8332588579862--799898
Q ss_pred HHHHHHHHHCCEEEECC--CCCCCCCC-C----------CCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999888567188037--89989999-8----------88985122466673079998999999999999960
Q gi|254780349|r 336 KRAESILGRVSITCNKN--SIPFDPES-P----------FITSGIRLGTPSGTTRGFKEKDFEYIGELIAQILD 396 (433)
Q Consensus 336 ~~a~~~Le~~gI~~Nkn--~iP~D~~~-~----------~~~sGiRlGT~aiTtrG~~e~em~~iA~li~~~L~ 396 (433)
T Consensus 305 ~~~~~~L~~~gI~v~~GsaCas~~~~~s~vl~a~g~~~~~~~~~vR~S~~~ynT----~eeId~~i~~l~~~v~ 374 (382)
T TIGR03403 305 EAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTT----EEEIDYTIEVFKKAVQ 374 (382)
T ss_pred HHHHHHHCCCCEEEECHHHHCCCCCCCCHHHHHCCCCHHHCCCEEEEECCCCCC----HHHHHHHHHHHHHHHH
T ss_conf 999998470997997557728998875899997199854459579997589999----9999999999999999