HHsearch alignment for GI: 254780349 and conserved domain: TIGR03537
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.58 E-value=1.7e-12 Score=107.56 Aligned_cols=270 Identities=16% Similarity=0.135 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHCCCCC---EECCCHHHHH-HHHHHHHHHHCCCCE---EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999998718863---0100001679-999999983154874---88123344841114766543333322013665
Q gi|254780349|r 81 ENIAIERAKKLFNVNF---VNVQSHSGSQ-MNQGVFLALMHPGDS---FMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNV 153 (433)
Q Consensus 81 E~la~~~a~~lF~a~~---anvqp~SG~~-An~av~~ALl~pGD~---Il~~~l~~GGHlshg~~~~~~g~~~~~~~y~~ 153 (433)
T Consensus 43 ~aia-~~~~~~~g~~~~~d~~I~~t~Ga~~al~~~~~~~~~~gd~~~~Vlv~~P~y~~y~~-----~~~~~g~~~~~v~l 116 (350)
T TIGR03537 43 DAIS-GWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYER-----GALFAGGEPTPVKL 116 (350)
T ss_pred HHHH-HHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHH-----HHHHCCCEEEEEEC
T ss_conf 9999-99999868998978779987883899999999973888778769994698730699-----99976998999753
Q ss_pred CCCC-CCCCHHHHHHHHHHHCCCEEEEECCCCC--CC---CCHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCC-
Q ss_conf 8323-5659899999998604667897055243--53---637999988641797899186201244320001232200-
Q gi|254780349|r 154 RKED-GLLDMHEIESLAIEYNPKLIIVGGTAYS--RV---WDWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPH- 226 (433)
Q Consensus 154 d~~~-~~ID~d~~~~~a~~~kPklIi~G~S~y~--~~---~d~~~l~eIa~~~ga~l~~D~aH~~GLIa~g~~~~Pl~~- 226 (433)
T Consensus 117 ~~~~g~~~d~e~l~~~~~-~~~~~i~l~nP~NPTG~v~s~~~l~~l~~~a~~~~~~vi~DE~Y~~-l~~~~~~~~~~~~~ 194 (350)
T TIGR03537 117 KEEDGFLLRLEKVDKEIL-KETKIVWINYPHNPTGAVAPRSYLEETIAICQEHNIILCSDECYTE-IYFGEPPHSALEVG 194 (350)
T ss_pred CCCCCCCCCHHHHHHHCC-CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEHHHHH-HHCCCCCCCHHHHC
T ss_conf 554488779999997466-6871999899989836476999999999863236907984312245-53489987755634
Q ss_pred CC--EEEECCCCCC--CCCCCEEEEECCCCHHHHCCHHHCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 23--5674045652--2567448983362056501664654322344556668999999997356489999999988899
Q gi|254780349|r 227 CH--IVTTTTHKSL--RGPRGGLIMTNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQA 302 (433)
Q Consensus 227 AD--vvt~sTHKtl--~GPrgGiI~~~~~e~~~~i~~avfPg~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~ 302 (433)
T Consensus 195 ~~~~i~~~S~SK~~~~pGlR~G~~~~~-~~li~~~~~~~~~~~~~~~~~~q~a~~~-~~~~--~~~~~~~~~~~~~~r~~ 270 (350)
T TIGR03537 195 MENVLAFHSLSKRSGMTGYRSGFVAGD-EKLISFLKKLRANFGVASPDFVQAAAKA-AWSD--DSHVIERRKIFRRKRDL 270 (350)
T ss_pred CCCEEEEECCCCCCCCCCCEEEEEECC-HHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHCC--HHHHHHHHHHHHHHHHH
T ss_conf 687799966754504677559999789-9999999998620677728999999999-9568--09999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCC---CCCCCCC
Q ss_conf 99998616852334588898126316655676799999888567188037899899998889---8512246
Q gi|254780349|r 303 LAKKLQFLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESILGRVSITCNKNSIPFDPESPFIT---SGIRLGT 371 (433)
Q Consensus 303 La~~L~~~G~~vv~ggTd~H~vlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~D~~~~~~~---sGiRlGT 371 (433)
T Consensus 271 ~~~~l~~~g~~~~~p-~g~~~~w~~~~-~~~~~~~~~~~ll~~gV~v~----pG~---~Fg~~~~~~~Rl~~ 333 (350)
T TIGR03537 271 FLEFFNKKGLEYLYP-DATFYLWVKVP-NGISSKDYALRLLENGIVVA----PGE---NFGSGEEGYVRVAL 333 (350)
T ss_pred HHHHHHHCCCEEECC-CCEEEEEEECC-CCCCHHHHHHHHHHCCEEEE----CCH---HHCCCCCCEEEEEE
T ss_conf 999986489888268-82259989799-99899999999997998997----673---11899998699997