HHsearch alignment for GI: 254780349 and conserved domain: cd00378
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=100.00 E-value=0 Score=1123.69 Aligned_cols=399 Identities=58% Similarity=0.978 Sum_probs=390.4
Q ss_pred HHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 85899999999999999838881043010298999983051028865798887533600679999999999999871886
Q gi|254780349|r 16 ESDPDVFSLIGQESCRQNDEIQLIASENIVSRAVLEAQGSILTNKYAEGYPSKRYYGGCQYVDDIENIAIERAKKLFNVN 95 (433)
Q Consensus 16 ~~Dpei~~~i~~e~~rq~~~l~LiASEN~~S~~v~~~l~S~l~nkyaeG~pg~ryy~G~~~~d~iE~la~~~a~~lF~a~ 95 (433)
T Consensus 2 e~D~ei~~~i~~E~~rq~~~l~LIaSEN~~S~~v~~a~gS~ltnkYaeG~pg~Ryy~G~~~iD~iE~la~~rak~LF~a~ 81 (402)
T cd00378 2 DVDPEIAEIIKKENERQRETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE 81 (402)
T ss_pred CCCHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 86889999999999999809647557664799999985673015476889986466766259999999999999983898
Q ss_pred CEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 301000016799999999831548748812334484111476--654333332201366583235659899999998604
Q gi|254780349|r 96 FVNVQSHSGSQMNQGVFLALMHPGDSFMGLSLDSGGHLTHGS--SVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYN 173 (433)
Q Consensus 96 ~anvqp~SG~~An~av~~ALl~pGD~Il~~~l~~GGHlshg~--~~~~~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~k 173 (433)
T Consensus 82 ~anVqp~SGs~AN~av~~all~pGD~il~l~l~~GGHltHg~~~~v~~~g~~~~~~~Y~vd~~~~~IDyd~~~~~a~~~k 161 (402)
T cd00378 82 YANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFK 161 (402)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 74758787399999999997279998998664347775667787720213567889632455658718999999998659
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCH
Q ss_conf 66789705524353637999988641797899186201244320001232200235674045652256744898336205
Q gi|254780349|r 174 PKLIIVGGTAYSRVWDWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPHCHIVTTTTHKSLRGPRGGLIMTNHADL 253 (433)
Q Consensus 174 PklIi~G~S~y~~~~d~~~l~eIa~~~ga~l~~D~aH~~GLIa~g~~~~Pl~~ADvvt~sTHKtl~GPrgGiI~~~~~e~ 253 (433)
T Consensus 162 PklIi~G~S~y~r~~d~~~~reIad~vgA~l~~D~aHi~GLIA~g~~p~Pl~~ADvvt~tTHKTlrGPrGGiIl~~~~~~ 241 (402)
T cd00378 162 PKLIVAGASAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLILTRKGEL 241 (402)
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHEECCCCCCCCCCCEEEECCCCCCCCCCCCEEEEECCHHH
T ss_conf 96999777156565588999999987098898550123443035657997687657744643457899840899542789
Q ss_pred HHHCCHHHCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 65016646543223445566689999999973564899999999888999999861685233458889812631665567
Q gi|254780349|r 254 AKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRM 333 (433)
Q Consensus 254 ~~~i~~avfPg~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~G~~vv~ggTd~H~vlvdl~~~~~ 333 (433)
T Consensus 242 ~~kId~avfPg~qggph~h~iAa~Aval~Ea~~~~f~~Ya~qVv~NAkaLA~~L~~~G~~vv~ggTd~H~vlvd~~~~g~ 321 (402)
T cd00378 242 AKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGFKVVSGGTDNHLVLVDLRPKGI 321 (402)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCC
T ss_conf 98854650986446745667899999999986866899999999999999999985894797489988779996664568
Q ss_pred CHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 67999998885671880378998999988898512246667307999899999999999996025776211799999999
Q gi|254780349|r 334 TGKRAESILGRVSITCNKNSIPFDPESPFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQILDGSSSDEENHSLELTVLH 413 (433)
Q Consensus 334 ~G~~a~~~Le~~gI~~Nkn~iP~D~~~~~~~sGiRlGT~aiTtrG~~e~em~~iA~li~~~L~~~~~~~~~~~~~~~ir~ 413 (433)
T Consensus 322 ~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~sGiRiGT~a~T~rG~~e~em~~ia~lI~~~l~~~~----d~~~~~~v~~ 397 (402)
T cd00378 322 TGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKDAE----DVAVAEEVRK 397 (402)
T ss_pred CHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCC----CHHHHHHHHH
T ss_conf 999999999984908754748899999999976164778998589988999999999999981789----8899999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780349|r 414 KVQEF 418 (433)
Q Consensus 414 ~V~~l 418 (433)
T Consensus 398 ~V~~L 402 (402)
T cd00378 398 EVAEL 402 (402)
T ss_pred HHHHC
T ss_conf 99759