HHsearch alignment for GI: 254780349 and conserved domain: cd00378

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=100.00  E-value=0  Score=1123.69  Aligned_cols=399  Identities=58%  Similarity=0.978  Sum_probs=390.4

Q ss_pred             HHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             85899999999999999838881043010298999983051028865798887533600679999999999999871886
Q gi|254780349|r   16 ESDPDVFSLIGQESCRQNDEIQLIASENIVSRAVLEAQGSILTNKYAEGYPSKRYYGGCQYVDDIENIAIERAKKLFNVN   95 (433)
Q Consensus        16 ~~Dpei~~~i~~e~~rq~~~l~LiASEN~~S~~v~~~l~S~l~nkyaeG~pg~ryy~G~~~~d~iE~la~~~a~~lF~a~   95 (433)
T Consensus         2 e~D~ei~~~i~~E~~rq~~~l~LIaSEN~~S~~v~~a~gS~ltnkYaeG~pg~Ryy~G~~~iD~iE~la~~rak~LF~a~   81 (402)
T cd00378           2 DVDPEIAEIIKKENERQRETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE   81 (402)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             86889999999999999809647557664799999985673015476889986466766259999999999999983898


Q ss_pred             CEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             301000016799999999831548748812334484111476--654333332201366583235659899999998604
Q gi|254780349|r   96 FVNVQSHSGSQMNQGVFLALMHPGDSFMGLSLDSGGHLTHGS--SVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYN  173 (433)
Q Consensus        96 ~anvqp~SG~~An~av~~ALl~pGD~Il~~~l~~GGHlshg~--~~~~~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~k  173 (433)
T Consensus        82 ~anVqp~SGs~AN~av~~all~pGD~il~l~l~~GGHltHg~~~~v~~~g~~~~~~~Y~vd~~~~~IDyd~~~~~a~~~k  161 (402)
T cd00378          82 YANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFK  161 (402)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             74758787399999999997279998998664347775667787720213567889632455658718999999998659


Q ss_pred             CCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCH
Q ss_conf             66789705524353637999988641797899186201244320001232200235674045652256744898336205
Q gi|254780349|r  174 PKLIIVGGTAYSRVWDWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPHCHIVTTTTHKSLRGPRGGLIMTNHADL  253 (433)
Q Consensus       174 PklIi~G~S~y~~~~d~~~l~eIa~~~ga~l~~D~aH~~GLIa~g~~~~Pl~~ADvvt~sTHKtl~GPrgGiI~~~~~e~  253 (433)
T Consensus       162 PklIi~G~S~y~r~~d~~~~reIad~vgA~l~~D~aHi~GLIA~g~~p~Pl~~ADvvt~tTHKTlrGPrGGiIl~~~~~~  241 (402)
T cd00378         162 PKLIVAGASAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLILTRKGEL  241 (402)
T ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHEECCCCCCCCCCCEEEECCCCCCCCCCCCEEEEECCHHH
T ss_conf             96999777156565588999999987098898550123443035657997687657744643457899840899542789


Q ss_pred             HHHCCHHHCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf             65016646543223445566689999999973564899999999888999999861685233458889812631665567
Q gi|254780349|r  254 AKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRM  333 (433)
Q Consensus       254 ~~~i~~avfPg~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~G~~vv~ggTd~H~vlvdl~~~~~  333 (433)
T Consensus       242 ~~kId~avfPg~qggph~h~iAa~Aval~Ea~~~~f~~Ya~qVv~NAkaLA~~L~~~G~~vv~ggTd~H~vlvd~~~~g~  321 (402)
T cd00378         242 AKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGFKVVSGGTDNHLVLVDLRPKGI  321 (402)
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCC
T ss_conf             98854650986446745667899999999986866899999999999999999985894797489988779996664568


Q ss_pred             CHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             67999998885671880378998999988898512246667307999899999999999996025776211799999999
Q gi|254780349|r  334 TGKRAESILGRVSITCNKNSIPFDPESPFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQILDGSSSDEENHSLELTVLH  413 (433)
Q Consensus       334 ~G~~a~~~Le~~gI~~Nkn~iP~D~~~~~~~sGiRlGT~aiTtrG~~e~em~~iA~li~~~L~~~~~~~~~~~~~~~ir~  413 (433)
T Consensus       322 ~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~sGiRiGT~a~T~rG~~e~em~~ia~lI~~~l~~~~----d~~~~~~v~~  397 (402)
T cd00378         322 TGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKDAE----DVAVAEEVRK  397 (402)
T ss_pred             CHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCC----CHHHHHHHHH
T ss_conf             999999999984908754748899999999976164778998589988999999999999981789----8899999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780349|r  414 KVQEF  418 (433)
Q Consensus       414 ~V~~l  418 (433)
T Consensus       398 ~V~~L  402 (402)
T cd00378         398 EVAEL  402 (402)
T ss_pred             HHHHC
T ss_conf             99759