BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780349|ref|YP_003064762.1| serine
hydroxymethyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(433 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780349|ref|YP_003064762.1| serine hydroxymethyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 433
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/433 (100%), Positives = 433/433 (100%)
Query: 1 MTIICKNRFFQQSLIESDPDVFSLIGQESCRQNDEIQLIASENIVSRAVLEAQGSILTNK 60
MTIICKNRFFQQSLIESDPDVFSLIGQESCRQNDEIQLIASENIVSRAVLEAQGSILTNK
Sbjct: 1 MTIICKNRFFQQSLIESDPDVFSLIGQESCRQNDEIQLIASENIVSRAVLEAQGSILTNK 60
Query: 61 YAEGYPSKRYYGGCQYVDDIENIAIERAKKLFNVNFVNVQSHSGSQMNQGVFLALMHPGD 120
YAEGYPSKRYYGGCQYVDDIENIAIERAKKLFNVNFVNVQSHSGSQMNQGVFLALMHPGD
Sbjct: 61 YAEGYPSKRYYGGCQYVDDIENIAIERAKKLFNVNFVNVQSHSGSQMNQGVFLALMHPGD 120
Query: 121 SFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVG 180
SFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVG
Sbjct: 121 SFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVG 180
Query: 181 GTAYSRVWDWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPHCHIVTTTTHKSLRG 240
GTAYSRVWDWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPHCHIVTTTTHKSLRG
Sbjct: 181 GTAYSRVWDWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPHCHIVTTTTHKSLRG 240
Query: 241 PRGGLIMTNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNS 300
PRGGLIMTNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNS
Sbjct: 241 PRGGLIMTNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNS 300
Query: 301 QALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESILGRVSITCNKNSIPFDPES 360
QALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESILGRVSITCNKNSIPFDPES
Sbjct: 301 QALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESILGRVSITCNKNSIPFDPES 360
Query: 361 PFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQILDGSSSDEENHSLELTVLHKVQEFVH 420
PFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQILDGSSSDEENHSLELTVLHKVQEFVH
Sbjct: 361 PFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQILDGSSSDEENHSLELTVLHKVQEFVH 420
Query: 421 CFPIYDFSASALK 433
CFPIYDFSASALK
Sbjct: 421 CFPIYDFSASALK 433
>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 762
Score = 26.9 bits (58), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 296 IVLNSQALAKKLQFLGFDIVSGGTDNHL 323
+VLNS +L + +F GFD + GG +L
Sbjct: 543 LVLNSTSLFTQNRFSGFDRIEGGNRTNL 570
>gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 622
Score = 26.2 bits (56), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 297 VLNSQALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESILGR 344
+L+ +A L GF+I SGG NH+ V L++ G E + R
Sbjct: 474 LLSIKAFQYDLVCNGFEIASGGIRNHMSEVMLQAFSNVGISKEVVENR 521
>gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 493
Score = 25.4 bits (54), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 230 VTTTTHKSLRGPRGGLIMTNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEF 289
V ++ +SLR GL T + I A FPG+ G M A++ + GE +
Sbjct: 367 VISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMT--ASRTI--GETM---- 418
Query: 290 RDYAKQIVLNSQALAKKLQFLGFD 313
IV+ + +A +LQF F+
Sbjct: 419 ------IVVLAAGVAARLQFNPFE 436
>gi|254780269|ref|YP_003064682.1| leucyl/phenylalanyl-tRNA--protein transferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 179
Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 265 LQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVSGGTDNHL 323
L GG ++ ++ AV FGE++ S + +K + + KK QFL DI NHL
Sbjct: 96 LVGG--LYGVSLGAVFFGESMFSHMENASKICLTHLVKHLKKRQFLLLDI--QFITNHL 150
>gi|254780781|ref|YP_003065194.1| 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 285
Score = 25.0 bits (53), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 154 RKEDGLLDMHEIESLAI----EYNPKLIIVGGTAYSRVWD 189
R ++G + H+ AI + NP II G YS WD
Sbjct: 51 RDDNGHWNTHQWIKKAILLSFQINPTKIISDGNGYSTWWD 90
>gi|254780660|ref|YP_003065073.1| hypothetical protein CLIBASIA_02735 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 244
Score = 24.6 bits (52), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 346 SITCNKNSIPFDPESPFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQILDGSSSDEENH 405
++T N+N S F + LG+ TTR FE IGE+I G S+
Sbjct: 100 ALTDNRNRTASSIRSIFTKANGSLGSTGSTTRF-----FEQIGEIIYHSNIGDSNLAMEV 154
Query: 406 SLE---LTVLHKVQEFV-HC 421
++E VL + QE++ +C
Sbjct: 155 AIESDAFEVLFEDQEYIFYC 174
>gi|254780856|ref|YP_003065269.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 218
Score = 24.6 bits (52), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 154 RKEDGLLDMHEIESLAIEYNPKLIIVGGTAYSRVWDWERFRSIADS 199
R DG L E+E N ++++G Y + ER I D+
Sbjct: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP-ERLEEIIDA 171
>gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter
asiaticus str. psy62]
Length = 423
Score = 23.5 bits (49), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 283 EALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVSGGTDNHLMLVD 327
E + EF+ ++ + +A K F DI+ GT +LV+
Sbjct: 332 EVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVE 376
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 277,635
Number of Sequences: 1233
Number of extensions: 11599
Number of successful extensions: 39
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 11
length of query: 433
length of database: 328,796
effective HSP length: 77
effective length of query: 356
effective length of database: 233,855
effective search space: 83252380
effective search space used: 83252380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)