BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780349|ref|YP_003064762.1| serine hydroxymethyltransferase [Candidatus Liberibacter asiaticus str. psy62] (433 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780349|ref|YP_003064762.1| serine hydroxymethyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 433 Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/433 (100%), Positives = 433/433 (100%) Query: 1 MTIICKNRFFQQSLIESDPDVFSLIGQESCRQNDEIQLIASENIVSRAVLEAQGSILTNK 60 MTIICKNRFFQQSLIESDPDVFSLIGQESCRQNDEIQLIASENIVSRAVLEAQGSILTNK Sbjct: 1 MTIICKNRFFQQSLIESDPDVFSLIGQESCRQNDEIQLIASENIVSRAVLEAQGSILTNK 60 Query: 61 YAEGYPSKRYYGGCQYVDDIENIAIERAKKLFNVNFVNVQSHSGSQMNQGVFLALMHPGD 120 YAEGYPSKRYYGGCQYVDDIENIAIERAKKLFNVNFVNVQSHSGSQMNQGVFLALMHPGD Sbjct: 61 YAEGYPSKRYYGGCQYVDDIENIAIERAKKLFNVNFVNVQSHSGSQMNQGVFLALMHPGD 120 Query: 121 SFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVG 180 SFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVG Sbjct: 121 SFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVG 180 Query: 181 GTAYSRVWDWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPHCHIVTTTTHKSLRG 240 GTAYSRVWDWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPHCHIVTTTTHKSLRG Sbjct: 181 GTAYSRVWDWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPHCHIVTTTTHKSLRG 240 Query: 241 PRGGLIMTNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNS 300 PRGGLIMTNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNS Sbjct: 241 PRGGLIMTNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNS 300 Query: 301 QALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESILGRVSITCNKNSIPFDPES 360 QALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESILGRVSITCNKNSIPFDPES Sbjct: 301 QALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESILGRVSITCNKNSIPFDPES 360 Query: 361 PFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQILDGSSSDEENHSLELTVLHKVQEFVH 420 PFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQILDGSSSDEENHSLELTVLHKVQEFVH Sbjct: 361 PFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQILDGSSSDEENHSLELTVLHKVQEFVH 420 Query: 421 CFPIYDFSASALK 433 CFPIYDFSASALK Sbjct: 421 CFPIYDFSASALK 433 >gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter asiaticus str. psy62] Length = 762 Score = 26.9 bits (58), Expect = 0.70, Method: Compositional matrix adjust. Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 296 IVLNSQALAKKLQFLGFDIVSGGTDNHL 323 +VLNS +L + +F GFD + GG +L Sbjct: 543 LVLNSTSLFTQNRFSGFDRIEGGNRTNL 570 >gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 622 Score = 26.2 bits (56), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 297 VLNSQALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESILGR 344 +L+ +A L GF+I SGG NH+ V L++ G E + R Sbjct: 474 LLSIKAFQYDLVCNGFEIASGGIRNHMSEVMLQAFSNVGISKEVVENR 521 >gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter asiaticus str. psy62] Length = 493 Score = 25.4 bits (54), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 14/84 (16%) Query: 230 VTTTTHKSLRGPRGGLIMTNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEF 289 V ++ +SLR GL T + I A FPG+ G M A++ + GE + Sbjct: 367 VISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMT--ASRTI--GETM---- 418 Query: 290 RDYAKQIVLNSQALAKKLQFLGFD 313 IV+ + +A +LQF F+ Sbjct: 419 ------IVVLAAGVAARLQFNPFE 436 >gi|254780269|ref|YP_003064682.1| leucyl/phenylalanyl-tRNA--protein transferase [Candidatus Liberibacter asiaticus str. psy62] Length = 179 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Query: 265 LQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVSGGTDNHL 323 L GG ++ ++ AV FGE++ S + +K + + KK QFL DI NHL Sbjct: 96 LVGG--LYGVSLGAVFFGESMFSHMENASKICLTHLVKHLKKRQFLLLDI--QFITNHL 150 >gi|254780781|ref|YP_003065194.1| 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 285 Score = 25.0 bits (53), Expect = 2.3, Method: Compositional matrix adjust. Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%) Query: 154 RKEDGLLDMHEIESLAI----EYNPKLIIVGGTAYSRVWD 189 R ++G + H+ AI + NP II G YS WD Sbjct: 51 RDDNGHWNTHQWIKKAILLSFQINPTKIISDGNGYSTWWD 90 >gi|254780660|ref|YP_003065073.1| hypothetical protein CLIBASIA_02735 [Candidatus Liberibacter asiaticus str. psy62] Length = 244 Score = 24.6 bits (52), Expect = 2.9, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 9/80 (11%) Query: 346 SITCNKNSIPFDPESPFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQILDGSSSDEENH 405 ++T N+N S F + LG+ TTR FE IGE+I G S+ Sbjct: 100 ALTDNRNRTASSIRSIFTKANGSLGSTGSTTRF-----FEQIGEIIYHSNIGDSNLAMEV 154 Query: 406 SLE---LTVLHKVQEFV-HC 421 ++E VL + QE++ +C Sbjct: 155 AIESDAFEVLFEDQEYIFYC 174 >gi|254780856|ref|YP_003065269.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 218 Score = 24.6 bits (52), Expect = 3.0, Method: Compositional matrix adjust. Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Query: 154 RKEDGLLDMHEIESLAIEYNPKLIIVGGTAYSRVWDWERFRSIADS 199 R DG L E+E N ++++G Y + ER I D+ Sbjct: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP-ERLEEIIDA 171 >gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 23.5 bits (49), Expect = 7.2, Method: Compositional matrix adjust. Identities = 12/45 (26%), Positives = 21/45 (46%) Query: 283 EALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVSGGTDNHLMLVD 327 E + EF+ ++ + +A K F DI+ GT +LV+ Sbjct: 332 EVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVE 376 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.136 0.398 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 277,635 Number of Sequences: 1233 Number of extensions: 11599 Number of successful extensions: 39 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 11 length of query: 433 length of database: 328,796 effective HSP length: 77 effective length of query: 356 effective length of database: 233,855 effective search space: 83252380 effective search space used: 83252380 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)