Query gi|254780350|ref|YP_003064763.1| hypothetical protein CLIBASIA_01175 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 431 No_of_seqs 220 out of 641 Neff 5.9 Searched_HMMs 33803 Date Wed Jun 1 12:42:38 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780350.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1zat_A L,D-transpeptidase; L, 99.8 4.7E-24 1.4E-28 167.8 -8.3 201 102-358 37-239 (250) 2 >1lbu_A Muramoyl-pentapeptide 99.7 3.7E-18 1.1E-22 131.4 3.2 90 93-182 1-90 (90) 3 >3bkh_A Phikz144, lytic transg 99.5 2.3E-14 6.9E-19 107.9 5.9 76 93-170 3-78 (87) 4 >1y7m_A Hypothetical protein B 99.4 7.6E-13 2.2E-17 98.6 6.6 99 191-357 3-101 (114) 5 >1l6j_A Matrix metalloproteina 98.4 8.5E-07 2.5E-11 61.2 6.4 74 93-168 4-78 (88) 6 >1slm_A Stromelysin-1; hydrola 98.1 6.5E-06 1.9E-10 55.8 5.8 66 103-168 6-73 (83) 7 >1ck7_A Protein (gelatinase A) 98.0 3E-05 8.9E-10 51.7 7.9 61 104-168 11-71 (81) 8 >1eak_A 72 kDa type IV collage 98.0 2.2E-05 6.6E-10 52.4 7.0 59 106-168 11-69 (79) 9 >1su3_A Interstitial collagena 98.0 9.9E-06 2.9E-10 54.6 5.2 64 105-168 6-71 (81) 10 >3d2y_A N-acetylmuramoyl-L-ala 97.1 0.0022 6.4E-08 40.2 6.9 60 102-165 13-73 (83) 11 >2ikb_A Hypothetical protein N 96.8 0.0018 5.4E-08 40.7 4.3 40 132-171 11-54 (98) 12 >2nr7_A Secretion activator pr 96.4 0.004 1.2E-07 38.6 4.3 37 132-168 14-53 (116) 13 >1k2x_A Putative L-asparaginas 41.4 17 0.0005 16.1 2.2 29 334-362 18-47 (68) 14 >1apy_A Aspartylglucosaminidas 39.5 19 0.00056 15.9 2.1 45 305-362 56-101 (121) 15 >1b25_A Protein (formaldehyde 37.1 26 0.00076 15.0 4.8 36 133-168 175-211 (224) 16 >1aor_A Aldehyde ferredoxin ox 33.4 29 0.00087 14.7 3.8 34 135-168 386-419 (422) 17 >1tt5_A APPBP1, amyloid protei 31.0 22 0.00064 15.5 1.3 57 98-159 10-69 (140) 18 >1k78_A Paired box protein PAX 26.9 12 0.00035 17.1 -0.6 20 104-123 27-46 (52) 19 >1wgv_A KIAA1068 protein; CS d 24.0 22 0.00065 15.4 0.3 10 338-347 8-17 (36) 20 >2ns0_A Hypothetical protein; 20.3 51 0.0015 13.2 3.6 33 254-286 41-73 (85) No 1 >>1zat_A L,D-transpeptidase; L,D-transpeptidation, peptidoglycan, beta-lactam insensitive transpeptidase, antibiotic resistance, transferase; 2.40A {Enterococcus faecium} (A:) Probab=99.84 E-value=4.7e-24 Score=167.79 Aligned_cols=201 Identities=11% Similarity=0.033 Sum_probs=160.9 Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 14688882489999999981986656787764578999999999998088878702999998844898898889864077 Q gi|254780350|r 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 (431) Q Consensus 102 L~~G~~~~~V~~Lr~RL~~~Gdl~~~~~~~~~yD~~l~~AVk~FQ~rhGL~~DGvig~~Tl~aLN~~~~~r~~qi~~nle 181 (431) ...|.-......++.++...++..........|+.....+|+.||.+||+..++.....++.+++.+...+..... .++ T Consensus 37 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 115 (250) T 1zat_A 37 YNDGKVDLDTEQVRQYVTDLGTKYNTSTNDTKFKSTKRGEVTVPVGTYSWTIQTDSETEALKKAILAGQDFTRSPI-VQG 115 (250) T ss_dssp EETTEEEECHHHHHHHHHHHHHHHCTTTSCEEEECSSSSEEEECCCSSCEEECHHHHHHHHHHHHHHTSCEEECCC-EEE T ss_pred ECCCEEEECHHHHHHHHHHHHHHEEECCCCEEEEECCCCEEEEECCCCCEEECHHHHHHHHHHHHHCCCCEEECEE-EEE T ss_conf 8699699879999999998766427378526999279978999168644697428999999999873897476527-873 Q ss_pred HHCCCCCCCCCCHHHHHHCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH Q ss_conf 53035556765234542045248999988855554123138877778554210038984487788766777777777641 Q gi|254780350|r 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 (431) Q Consensus 182 r~r~l~~~~~~~~~v~VNip~~~l~~~e~g~~~~~~~viVGk~~~~TP~~~~~i~~iv~NP~W~vP~sI~~~eilpk~~~ 261 (431) ++++.+ ...+.++|+||+++++|.++++|+.++.++|++|+++++||.+...|..++.||.|+.|.+ T Consensus 116 ~~~~~~-~~~~~~~I~Vd~~~~~l~~~~~g~~v~~~~v~~G~~~~~Tp~G~~~i~~k~~~~~~~~~~~------------ 182 (250) T 1zat_A 116 GTTADH-PLIEDTYIEVDLENQHMWYYKDGKVALETDIVSGKPTTPTPAGVFYVWNKEEDATLKGTND------------ 182 (250) T ss_dssp SSCSSS-CSSCSCEEEEETTTTEEEEEETTEEEEEEECBCBCTTSCCCCEEEECCCCEEEEECCBCC------------- T ss_pred CCCCCC-CCCCCCEEEEECCCCEEEEEECCEEEEEEEEECCCCCCCCCCEEEEEEEEECCCEEECCCC------------ T ss_conf 421478-9878839999973699999999999999988717897989956999999855977841588------------ Q ss_pred CHHHHHHCCEEEECCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCEEEECCCCCHHHCCCC--CCCC Q ss_conf 86778749939993899783502047010445772247268999863148953158876681388983232865--5554 Q gi|254780350|r 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV--VRFE 339 (431) Q Consensus 262 dp~yl~~~~~~i~~~~g~~vdp~~i~w~~~~~~~~~~rQ~PGp~NaLG~vkf~f~N~~~iyLHdTP~~~lF~~~--~Ra~ 339 (431) ..++.++.|..++.|... ++++|+++..+.+... .... T Consensus 183 ---------------------------------------~~~~~~~~~~~~~~~~~~-g~~~h~~~~~~~~~~~~~G~~~ 222 (250) T 1zat_A 183 ---------------------------------------DGTPYESPVNYWMPIDWT-GVGIHDSDWQPEYGGDLWKTRG 222 (250) T ss_dssp ----------------------------------------CCCBCCEEEEEEECSSS-SCEEEECTTCSCCSTTHHHHHC T ss_pred ---------------------------------------CCCCCCCCCCEEEECCCC-EEEEECCCCCCCCCCCCCCCCC T ss_conf ---------------------------------------888867654368862798-7999789975332424589978 Q ss_pred CCCCEECCCHHHHHHHHHC Q ss_conf 1150344798999999840 Q gi|254780350|r 340 TSGCVRVRNIIDLDVWLLK 358 (431) Q Consensus 340 ShGCVRv~np~~La~~ll~ 358 (431) |||||||.|. -|.||.. T Consensus 223 ShGCIrl~~~--da~~l~~ 239 (250) T 1zat_A 223 SHGCINTPPS--VMKELFG 239 (250) T ss_dssp BSSSEEECHH--HHHHHHH T ss_pred CCCEECCCHH--HHHHHHH T ss_conf 8868587989--9999995 No 2 >>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus G} (A:1-90) Probab=99.71 E-value=3.7e-18 Score=131.39 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=82.1 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHH Q ss_conf 98547777414688882489999999981986656787764578999999999998088878702999998844898898 Q gi|254780350|r 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 (431) Q Consensus 93 gW~~i~~~~L~~G~~~~~V~~Lr~RL~~~Gdl~~~~~~~~~yD~~l~~AVk~FQ~rhGL~~DGvig~~Tl~aLN~~~~~r 172 (431) .||.-....|++|+++++|..|++||...||+......++.||+.+++||++||++|||++||++|+.||.+|+.+...+ T Consensus 1 ~~p~~~~~~l~~G~~g~~V~~lQ~~L~~~G~~~~~~~~dg~fg~~t~~Av~~FQ~~~gl~~dG~~~~~T~~~L~~~~~~~ 80 (90) T 1lbu_A 1 DGCYTWSGTLSEGSSGEAVRQLQIRVAGYPGTGAQLAIDGQFGPATKAAVQRFQSAYGLAADGIAGPATFNKIYQLQDDD 80 (90) T ss_dssp CCSCCCCSCBCTTCBSHHHHHHHHHTTTCSCTTCCCCCSSBCCHHHHHHHHHHHHHTTSCCSSCBCHHHHHHHHHHBCTT T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC T ss_conf 98754785788999728999999999865998777787897788999999999998599999849999999998665246 Q ss_pred HHHHHHHHHH Q ss_conf 8898640775 Q gi|254780350|r 173 IRQLQVNLMR 182 (431) Q Consensus 173 ~~qi~~nler 182 (431) ..++.+|++. T Consensus 81 ~~~~~~~~~~ 90 (90) T 1lbu_A 81 CTPVNFTYAE 90 (90) T ss_dssp SSBTTCCTTT T ss_pred CCCCCCCHHH T ss_conf 6555667788 No 3 >>3bkh_A Phikz144, lytic transglycosylase; bacteriophage, endolysin, peptidoglycan, cell WALL degradation, lysozyme, hydrolase; 2.50A {Pseudomonas phage phikz} PDB: 3bkv_A* (A:1-87) Probab=99.50 E-value=2.3e-14 Score=107.91 Aligned_cols=76 Identities=20% Similarity=0.146 Sum_probs=66.9 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHH Q ss_conf 985477774146888824899999999819866567877645789999999999980888787029999988448988 Q gi|254780350|r 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 (431) Q Consensus 93 gW~~i~~~~L~~G~~~~~V~~Lr~RL~~~Gdl~~~~~~~~~yD~~l~~AVk~FQ~rhGL~~DGvig~~Tl~aLN~~~~ 170 (431) +||.-+...|++|+++++|..|+++|...|++ ....++.||+.+++||++||++|||++||++|+.||.+|+.... T Consensus 3 ~~p~~~~~~l~~G~~~~~V~~lQ~~L~~~G~~--~~~~dg~~g~~t~~Av~~fQ~~~gl~~dG~~~~~T~~~L~~~~~ 78 (87) T 3bkh_A 3 HHHGSIXKVLRKGDRGDEVCQLQTLLNLCGYD--VGKPDGIFGNNTFNQVVKFQKDNCLDSDGIVGKNTWAELFSKYS 78 (87) T ss_dssp HHHHHTSCCBCTTCBSHHHHHHHHHHHTTTCC--CCSCCSBCCHHHHHHHHHHHHHTTSCCSSCBCHHHHHHHHHHCC T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC--CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC T ss_conf 77777578578899974899999999987899--89988987889999999999981999987469999999854024 No 4 >>1y7m_A Hypothetical protein BSU14040; surface mutagenesis, cysteine proteases, cell WALL catabolism, structural genomics, PSI; 2.05A {Bacillus subtilis subsp} (A:51-164) Probab=99.38 E-value=7.6e-13 Score=98.60 Aligned_cols=99 Identities=22% Similarity=0.195 Sum_probs=83.6 Q ss_pred CCCHHHHHHCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCHHHHHHCC Q ss_conf 65234542045248999988855554123138877778554210038984487788766777777777641867787499 Q gi|254780350|r 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 (431) Q Consensus 191 ~~~~~v~VNip~~~l~~~e~g~~~~~~~viVGk~~~~TP~~~~~i~~iv~NP~W~vP~sI~~~eilpk~~~dp~yl~~~~ 270 (431) .++.+|+||+++.+|.++++|+.++.+.+.+|+.+.+||.....|....-+|+|+ T Consensus 3 ~~~~~I~Vd~~~~~l~~~~~g~~~~~~~vs~G~~~~~TP~G~~~v~~k~~~~~~~------------------------- 57 (114) T 1y7m_A 3 TIPYHIAVSIGAKTLTLSLNNRVXKTYPIAVGKILTQTPTGEFYIINRQRNPGGP------------------------- 57 (114) T ss_dssp GCCEEEEEETTTTEEEEEETTEEEEEEECBEEBTTBCCCCEEEEEEEEEECCCGG------------------------- T ss_pred CCCCCCCCCHHHCEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCC------------------------- T ss_conf 2332001331221011105772799823555668997998507842123455677------------------------- Q ss_pred EEEECCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCEEEECCCCCHHHCCCCCCCCCCCCEECCCHH Q ss_conf 39993899783502047010445772247268999863148953158876681388983232865555411503447989 Q gi|254780350|r 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 (431) Q Consensus 271 ~~i~~~~g~~vdp~~i~w~~~~~~~~~~rQ~PGp~NaLG~vkf~f~N~~~iyLHdTP~~~lF~~~~Ra~ShGCVRv~np~ 350 (431) .|..++.|.+. ++++|+|+....++.. .|||||||.++. T Consensus 58 -------------------------------------~~~~~~~~~~~-g~~ihg~~~~~~~g~~---~ShGCIrl~~~d 96 (114) T 1y7m_A 58 -------------------------------------FGAYWLSLSAA-HYGIHGTNNPASIGKA---VSKGCIRXHNKD 96 (114) T ss_dssp -------------------------------------GTTEEEEESST-TCEEECCSCGGGTTSE---EESSCEECCHHH T ss_pred -------------------------------------CCCEEECCCCC-CEEECCEECCCCCCCC---CCCCCCCCCHHH T ss_conf -------------------------------------64325316764-3776440564446997---888871729999 Q ss_pred HHHHHHH Q ss_conf 9999984 Q gi|254780350|r 351 DLDVWLL 357 (431) Q Consensus 351 ~La~~ll 357 (431) |+||. T Consensus 97 --a~~ly 101 (114) T 1y7m_A 97 --VIELA 101 (114) T ss_dssp --HHHHH T ss_pred --HHHHH T ss_conf --99999 No 5 >>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} (A:1-88) Probab=98.38 E-value=8.5e-07 Score=61.21 Aligned_cols=74 Identities=26% Similarity=0.209 Sum_probs=62.5 Q ss_pred CCCC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC Q ss_conf 9854-777741468888248999999998198665678776457899999999999808887870299999884489 Q gi|254780350|r 93 GWPE-LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 (431) Q Consensus 93 gW~~-i~~~~L~~G~~~~~V~~Lr~RL~~~Gdl~~~~~~~~~yD~~l~~AVk~FQ~rhGL~~DGvig~~Tl~aLN~~ 168 (431) .|+. ....+..+......+....+-|...||+... ....++..+.+||+.||+-.||++||.+|.+|++.|+.| T Consensus 4 ~~~~~~~~~p~~~~~~~~~~~~a~~yL~~fGYl~~~--~~~~~~~~~~~ai~~fQ~~~~L~~TG~lD~~T~~~m~~P 78 (88) T 1l6j_A 4 QRQSTLVLFPGDLRTNLTDRQLAEEYLYRYGYTRVA--EMRGESKSLGPALLLLQKQLSLPETGELDSATLKAMRTP 78 (88) T ss_dssp ------CCCTTCCCCCCCHHHHHHHHHHHTTCC-------------CHHHHHHHHHHHTCCCCSSCCHHHHHHHTSC T ss_pred CCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC T ss_conf 779951327887556876699999999974999987--667763899999999999749997768399999987578 No 6 >>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} (A:1-83) Probab=98.09 E-value=6.5e-06 Score=55.77 Aligned_cols=66 Identities=24% Similarity=0.210 Sum_probs=54.0 Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC Q ss_conf 4688882489999999981986656787--76457899999999999808887870299999884489 Q gi|254780350|r 103 HLGNSSVSVQRLRERLIISGDLDPSKGL--SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 (431) Q Consensus 103 ~~G~~~~~V~~Lr~RL~~~Gdl~~~~~~--~~~yD~~l~~AVk~FQ~rhGL~~DGvig~~Tl~aLN~~ 168 (431) +.+..-..+.....-|..-||++.+... ....+..+.+||+.||+-.||++||.+|.+|+++|+.| T Consensus 6 ~~~~~~~~~~~a~~yL~~fGyl~~~~~~~~~~~~~~~~~~ai~~~Q~f~gL~~TG~lD~~T~~~M~~P 73 (83) T 1slm_A 6 AARGEDTSMNLVQKYLENYYDLKKDVKQFVRRKDSGPVVKKIREMQKFLGLEVTGKLDSDTLEVMRKP 73 (83) T ss_dssp ----------CHHHHHHHHSCCCCC---------CHHHHHHHHHHHHHTTCCCCSSCCHHHHHHTTSC T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC T ss_conf 67776110999999999828999874322345546899999999999719984132699999987567 No 7 >>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} (A:1-81) Probab=98.01 E-value=3e-05 Score=51.66 Aligned_cols=61 Identities=18% Similarity=0.096 Sum_probs=52.3 Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC Q ss_conf 68888248999999998198665678776457899999999999808887870299999884489 Q gi|254780350|r 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 (431) Q Consensus 104 ~G~~~~~V~~Lr~RL~~~Gdl~~~~~~~~~yD~~l~~AVk~FQ~rhGL~~DGvig~~Tl~aLN~~ 168 (431) .-.....+....+-|..-||++.. ......+.+||+.||+-.||++||.+|.+|++.|+.| T Consensus 11 ~~~~~~~~~~~~~YL~~fgyl~~~----~~~~~~~~~ai~~~Q~f~gL~~TG~lD~~T~~~m~~P 71 (81) T 1ck7_A 11 DVAPKTDKELAVQYLNTFYGCPKE----SCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKP 71 (81) T ss_dssp CCCCCCHHHHHHHHHHHHTCCCTT----TCSHHHHHHHHHHHHHHHTCCSCSSCCHHHHHHTTSC T ss_pred CCCCCCCHHHHHHHHHHHCCCCCC----CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC T ss_conf 889864799999999985789845----5763479999999998759997677499999986579 No 8 >>1eak_A 72 kDa type IV collagenase; hydrolyse, matrix metalloproteinase, gelatinase A; 2.66A {Homo sapiens} (A:1-79) Probab=97.99 E-value=2.2e-05 Score=52.44 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=50.8 Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC Q ss_conf 888248999999998198665678776457899999999999808887870299999884489 Q gi|254780350|r 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 (431) Q Consensus 106 ~~~~~V~~Lr~RL~~~Gdl~~~~~~~~~yD~~l~~AVk~FQ~rhGL~~DGvig~~Tl~aLN~~ 168 (431) .....+.....-|..-||++... .....+.+||+.||+-.||++||.+|.+|++.|+.| T Consensus 11 ~~~~~~~~~~~YL~~fgyl~~~~----~~~~~~~~ai~~~Q~f~~L~~TG~lD~~T~~~m~~P 69 (79) T 1eak_A 11 APKTDKELAVQYLNTFYGCPKES----CNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKP 69 (79) T ss_dssp CCCCHHHHHHHHHHHHTCCCSSC----CCHHHHHHHHHHHHHHSSCCCCCSCCHHHHHHHTSC T ss_pred CCCCCHHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC T ss_conf 98657999999999847998666----752569999999999749997767599999987489 No 9 >>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} (A:1-81) Probab=97.99 E-value=9.9e-06 Score=54.62 Aligned_cols=64 Identities=22% Similarity=0.184 Sum_probs=52.9 Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC Q ss_conf 88882489999999981986656787--76457899999999999808887870299999884489 Q gi|254780350|r 105 GNSSVSVQRLRERLIISGDLDPSKGL--SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 (431) Q Consensus 105 G~~~~~V~~Lr~RL~~~Gdl~~~~~~--~~~yD~~l~~AVk~FQ~rhGL~~DGvig~~Tl~aLN~~ 168 (431) +....++.....-|..-||++.+... ....+..+.+||+.||+-.||++||.+|.+|++.|+.| T Consensus 6 ~~~~~~~~~a~~YL~~fGYl~~~~~~~~~~~~~~~~~~ai~~~Q~f~gL~~TG~lD~~T~~~M~~P 71 (81) T 1su3_A 6 ETQEQDVDLVQKYLEKYYNLKNDGRQVEKRRNSGPVVEKLKQMQEFFGLKVTGKPDAETLKVMKQP 71 (81) T ss_dssp -------CHHHHHHHHHSCCC------------CHHHHHHHHHHHHTTCCCCSSCCHHHHHHHTSC T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC T ss_conf 454013899999999718999886422344666899999999999759997767399999987479 No 10 >>3d2y_A N-acetylmuramoyl-L-alanine amidase AMID; zinc amidase, PGRP, peptidoglycan recognizing protein, AMPD; HET: AH0; 1.75A {Escherichia coli str} PDB: 2bh7_A 2bgx_A* 3d2z_A (A:179-261) Probab=97.06 E-value=0.0022 Score=40.17 Aligned_cols=60 Identities=18% Similarity=0.013 Sum_probs=49.8 Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHH Q ss_conf 14688882489999999981986656787764578999999999998088-87870299999884 Q gi|254780350|r 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEAM 165 (431) Q Consensus 102 L~~G~~~~~V~~Lr~RL~~~Gdl~~~~~~~~~yD~~l~~AVk~FQ~rhGL-~~DGvig~~Tl~aL 165 (431) ...+...+.|..|+..|..-||-. .++.||+.+...|++||...-= ..||+.|.+|.+-| T Consensus 13 ~~~~~~~~~v~~lq~~L~~YGY~i----~~g~~d~~t~~vi~AFQ~HFRP~~~dG~~DaeT~AiL 73 (83) T 3d2y_A 13 GRAPHTPVDTASLLELLARYGYDV----KPDMTPREQRRVIMAFQMHFRPTLYNGEADAETQAIA 73 (83) T ss_dssp TCCTTCBCCHHHHHHHHHHHTCCC----CSSCCHHHHHHHHHHHHHHHCTTCCSCCCBHHHHHHH T ss_pred HHCCCCCHHHHHHHHHHHHHCEEC----CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH T ss_conf 530146156899999999848534----5466705677999998324276256782789999999 No 11 >>2ikb_A Hypothetical protein NMB1012; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 1.70A {Neisseria meningitidis MC58} (A:70-167) Probab=96.75 E-value=0.0018 Score=40.65 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=32.7 Q ss_pred CCCCHHH----HHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHH Q ss_conf 6457899----999999999808887870299999884489889 Q gi|254780350|r 132 VAFDAYV----ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 (431) Q Consensus 132 ~~yD~~l----~~AVk~FQ~rhGL~~DGvig~~Tl~aLN~~~~~ 171 (431) .+||..+ ..|+|-.|+.-|+.+||+|||.|++++|.-... T Consensus 11 ~~fD~aVN~G~~~A~k~LQ~al~v~~DGiiGp~Tl~A~~~~~~~ 54 (98) T 2ikb_A 11 QFFDACVNHGYGNAARXLQRAAGVPDDGVIGAVSLKAINSLPEN 54 (98) T ss_dssp HHHHHHHHHCHHHHHHHHHHHTTSCCSSCCCHHHHHHHHHSCHH T ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHH T ss_conf 99857322683279999999838764567478889999834959 No 12 >>2nr7_A Secretion activator protein, putative; APCC85792, structural genomics, PSI-2, protein structure initiative, MCSG; 1.30A {Porphyromonas gingivalis W83} (A:80-195) Probab=96.43 E-value=0.004 Score=38.56 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=32.7 Q ss_pred CCCCHHHH---HHHHHHHHHCCCCCCCCCCHHHHHHHCCC Q ss_conf 64578999---99999999808887870299999884489 Q gi|254780350|r 132 VAFDAYVE---SAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 (431) Q Consensus 132 ~~yD~~l~---~AVk~FQ~rhGL~~DGvig~~Tl~aLN~~ 168 (431) .+||..+- .|+|-.|+.-|+++||+|||.|++||+.- T Consensus 14 ~~fD~aVN~G~~A~k~LQ~al~v~vDGiiGp~Tl~Al~~~ 53 (116) T 2nr7_A 14 ILVDWVWGSGKYGIVIPQRILGVQADGIVGNKTLQAVNSA 53 (116) T ss_dssp HHHHHHHHHBTHHHHHHHHHHTSCCCSCCCHHHHHHHHHS T ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC T ss_conf 9888884675678999999738776677298999999955 No 13 >>1k2x_A Putative L-asparaginase; NTN hydrolase, asparginase, autoproteolysis; HET: CME; 1.65A {Escherichia coli} (A:72-139) Probab=41.41 E-value=17 Score=16.13 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=22.7 Q ss_pred CCCCCCCCCCEE-CCCHHHHHHHHHCCCCC Q ss_conf 655554115034-47989999998404889 Q gi|254780350|r 334 NVVRFETSGCVR-VRNIIDLDVWLLKDTPT 362 (431) Q Consensus 334 ~~~Ra~ShGCVR-v~np~~La~~ll~~~~~ 362 (431) ++.|+-+=+||| +.||..+|..|+.+++- T Consensus 18 ~t~~~gaV~~v~~v~nPi~vAr~vl~~~~h 47 (68) T 1k2x_A 18 NTLKAGAVAGVSHLRNPVLAARLVMEQSPH 47 (68) T ss_dssp TTCCEEEEEEESSCSCHHHHHHHHHHHSSC T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHCCCC T ss_conf 998613686515556789999999834998 No 14 >>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} (A:1-121) Probab=39.49 E-value=19 Score=15.86 Aligned_cols=45 Identities=20% Similarity=0.325 Sum_probs=30.0 Q ss_pred CCCCEEEEEECCCCCEEEECCCCCHHHCCCCCCCCCCCCEE-CCCHHHHHHHHHCCCCC Q ss_conf 98631489531588766813889832328655554115034-47989999998404889 Q gi|254780350|r 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR-VRNIIDLDVWLLKDTPT 362 (431) Q Consensus 305 ~NaLG~vkf~f~N~~~iyLHdTP~~~lF~~~~Ra~ShGCVR-v~np~~La~~ll~~~~~ 362 (431) -|..|.|-.+= =.|+|.. .|+-+=+||| +.||..+|..|+.+++- T Consensus 56 ~n~dG~velDA-----siMdG~~--------~~~GaV~~v~~v~nPI~vAr~vme~~~h 101 (121) T 1apy_A 56 PDELGETTLDA-----MIMDGTT--------MDVGAVGDLRRIKNAIGVARKVLEHTTH 101 (121) T ss_dssp CCTTSCCCEEE-----EEEETTT--------CCEEEEEEECSCSCHHHHHHHHHHHBSC T ss_pred CCCCCCEEEEE-----EEEECCC--------CCCCCCCCCCCCCCHHHHHHHHHCCCCC T ss_conf 67789887745-----4453367--------7634433667567989999999747985 No 15 >>1b25_A Protein (formaldehyde ferredoxin oxidoreductase); MOCO, tungstoenzyme, tungsten containing protein, hyperthermophIle; HET: PTT; 1.85A {Pyrococcus furiosus} (A:208-229,A:418-619) Probab=37.14 E-value=26 Score=15.03 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=32.7 Q ss_pred CCC-HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC Q ss_conf 457-899999999999808887870299999884489 Q gi|254780350|r 133 AFD-AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 (431) Q Consensus 133 ~yD-~~l~~AVk~FQ~rhGL~~DGvig~~Tl~aLN~~ 168 (431) ..| +.++++++.|=+..|...||+-.++|++.|... T Consensus 175 ~ld~e~~e~~l~~YY~~rGWDe~G~Pt~e~L~~LgL~ 211 (224) T 1b25_A 175 HLDEKKYDELLSEYYRIRGWDERGIPKKETLKELDLD 211 (224) T ss_dssp CCCHHHHHHHHHHHHHHHTBCTTSCBCHHHHHHTTCT T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCH T ss_conf 6899999999999999739898883799999987996 No 16 >>1aor_A Aldehyde ferredoxin oxidoreductase; HET: PTE; 2.30A {Pyrococcus furiosus} (A:1-238,A:422-605) Probab=33.39 E-value=29 Score=14.66 Aligned_cols=34 Identities=12% Similarity=0.279 Sum_probs=29.7 Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC Q ss_conf 7899999999999808887870299999884489 Q gi|254780350|r 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 (431) Q Consensus 135 D~~l~~AVk~FQ~rhGL~~DGvig~~Tl~aLN~~ 168 (431) -+.+++++..|=+.+|..++|+..++|++.|... T Consensus 386 ~~~~e~~l~~YY~~rGWd~~G~Pt~e~L~~LgL~ 419 (422) T 1aor_A 386 TVRLKEMLPRYYKLRGWTEDGKIPKEKLEELGIA 419 (422) T ss_dssp CCCHHHHHHHHHHHHTCCTTSCCCHHHHHHHTCG T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCC T ss_conf 6679999999999729798997799999976891 No 17 >>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} (A:169-183,A:275-399) Probab=30.97 E-value=22 Score=15.48 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=31.6 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCC-CCCCCCCCH Q ss_conf 77741468888248999999998198665678776457899999999999--808-887870299 Q gi|254780350|r 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM--RHG-LDPSGMVDS 159 (431) Q Consensus 98 ~~~~L~~G~~~~~V~~Lr~RL~~~Gdl~~~~~~~~~yD~~l~~AVk~FQ~--rhG-L~~DGvig~ 159 (431) |...|.++.....|.+|=.--.... + ...+..| =-+..|+|.|=. .|| ||..|.|-. T Consensus 10 ~~~~~~~~~ip~~v~~if~d~~~~n-l---~~~s~~F-Wilv~ALK~Fv~~e~~g~LPL~G~lPD 69 (140) T 1tt5_A 10 PDNALETTQIPSSIEDIFNDDRCIN-I---TKQTPSF-WILARALKEFVAKEGQGNLPVRGTIPD 69 (140) T ss_dssp CSSCCCCCCCCHHHHHHHTSHHHHS-C---CSSCCHH-HHHHHHHHHHHHTTTTTSCCCCCCCCC T ss_pred CCCCCCCCCCCHHHHHHHCCCCCCC-C---CCCCCCH-HHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 9877676678778999862655445-7---7778518-999999999998536888888998887 No 18 >>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} (A:32-83) Probab=26.88 E-value=12 Score=17.08 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=8.1 Q ss_pred CCCCCCCHHHHHHHHHHCCC Q ss_conf 68888248999999998198 Q gi|254780350|r 104 LGNSSVSVQRLRERLIISGD 123 (431) Q Consensus 104 ~G~~~~~V~~Lr~RL~~~Gd 123 (431) +..++.-|..+-.|-..+|- T Consensus 27 L~VShgCVSKIL~Ry~eTGs 46 (52) T 1k78_A 27 LRVSHGCVSKILGRYYETGS 46 (52) T ss_dssp HTCCHHHHHHHHHHHHHHSC T ss_pred HCCCHHHHHHHHHHHHHCCC T ss_conf 78688999999999985288 No 19 >>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} (A:43-78) Probab=23.98 E-value=22 Score=15.43 Aligned_cols=10 Identities=30% Similarity=0.325 Sum_probs=6.9 Q ss_pred CCCCCCEECC Q ss_conf 5411503447 Q gi|254780350|r 338 FETSGCVRVR 347 (431) Q Consensus 338 a~ShGCVRv~ 347 (431) ++|++||||. T Consensus 8 ~L~ss~irVa 17 (36) T 1wgv_A 8 ALSSSSIRVA 17 (36) T ss_dssp EECSSEEEEE T ss_pred EEECCEEEEE T ss_conf 9662889999 No 20 >>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} (A:) Probab=20.25 E-value=51 Score=13.17 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=22.9 Q ss_pred HHHHHHHHCHHHHHHCCEEEECCCCCEECCCCC Q ss_conf 777776418677874993999389978350204 Q gi|254780350|r 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 (431) Q Consensus 254 eilpk~~~dp~yl~~~~~~i~~~~g~~vdp~~i 286 (431) ++++..++.-.-|...|-.++...|+.|||... T Consensus 41 ~lm~~VR~~A~~La~~G~i~I~qkG~pVdp~~~ 73 (85) T 2ns0_A 41 PLXEPVREAAGRLADAGEVEVTQKGAVVDPRSA 73 (85) T ss_dssp GGHHHHHHHHHHHHHTTSEEEEETTEECCTTTC T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCEECCCCCC T ss_conf 872999999999987796899779987471127 Done!