HHsearch results for GI: 254780350 and protein with PDBid: 1l6j_A
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2
Probab=97.77 E-value=3e-05 Score=50.71 Aligned_cols=109 Identities=23% Similarity=0.235 Sum_probs=70.0
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 14688882489999999981986656787764578999999999998088878702999998844898898889864077
Q gi|254780350|r 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 (431)
Q Consensus 102 L~~G~~~~~V~~Lr~RL~~~Gdl~~~~~~~~~yD~~l~~AVk~FQ~rhGL~~DGvig~~Tl~aLN~~~~~r~~qi~~nle 181 (431)
++...++ ....++=|..-|||..... ...+..+++|||.||+-.||++||++|.+|++.|+.|-
T Consensus 16 ~~~~~~d--~~~a~~YL~~yGYl~~~~~--~~~~~~l~~Ai~~~Q~f~gL~~TG~LD~~T~~~M~~PR------------ 79 (425)
T 1l6j_A 16 LRTNLTD--RQLAEEYLYRYGYTRVAEM--RGESKSLGPALLLLQKQLSLPETGELDSATLKAMRTPR------------ 79 (425)
T ss_dssp CCCCCCH--HHHHHHHHHHTTCC-------------CHHHHHHHHHHHTCCCCSSCCHHHHHHHTSCB------------
T ss_pred CCCCCCC--HHHHHHHHHHCCCCCCCCC--CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCC------------
T ss_conf 4568766--8999999997499998766--67628999999999997499977684999999874898------------
Q ss_pred HHCCCCCCCCCCHHHHHHCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 5303555676523454204524899998885555412313887777855421003898448778876677777777
Q gi|254780350|r 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 (431)
Q Consensus 182 r~r~l~~~~~~~~~v~VNip~~~l~~~e~g~~~~~~~viVGk~~~~TP~~~~~i~~iv~NP~W~vP~sI~~~eilp 257 (431)
+ ..+ +.. +.+...|.+.+.. ..+++-+.|=+...+.+.++..+--
T Consensus 80 -C-Gvp--D~~-----------------------~~~~~~~~~kW~k----~~lTy~i~nyt~~l~~~~v~~~i~~ 124 (425)
T 1l6j_A 80 -C-GVP--DLG-----------------------RFQTFEGDLKWHH----HNITYWIQNYSEDLPRAVIDDAFAR 124 (425)
T ss_dssp -C-SSC--SSS-----------------------CSSCCSSCSSCCS----SEEEEEECCCCTTSCHHHHHHHHHH
T ss_pred -C-CCC--CCC-----------------------CCCCCCCCCCCCC----CCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf -8-998--733-----------------------2345678998767----8843898507999898999999999