HHSEARCH alignment of GI: 254780350 and SCOP domain: d1eaka1

Alignment

Probab=97.72  E-value=5.4e-05  Score=47.64  Aligned_cols=55  Identities=20%  Similarity=0.146  Sum_probs=45.3

Q ss_pred             CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC
Q ss_conf             48999999998198665678776457899999999999808887870299999884489
Q gi|254780350|r  110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP  168 (431)
Q Consensus       110 ~V~~Lr~RL~~~Gdl~~~~~~~~~yD~~l~~AVk~FQ~rhGL~~DGvig~~Tl~aLN~~  168 (431)
                      ++....+-|..-|+++....  +  ...+.+||+.||+-.||+++|.+|.+|++.|..|
T Consensus        15 d~e~A~~YL~~fgyl~~~~~--~--~~~l~~ai~~~Q~f~~L~~TG~lD~~T~~~m~~p   69 (76)
T d1eaka1          15 DKELAVQYLNTFYGCPKESC--N--LFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKP   69 (76)
T ss_dssp             HHHHHHHHHHHHTCCCSSCC--C--HHHHHHHHHHHHHHSSCCCCCSCCHHHHHHHTSC
T ss_pred             CHHHHHHHHHHHCCCCCCCC--C--CHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC
T ss_conf             39999999999579986777--5--0799999999999819985355699999988668

SCOP domain information

class: All alpha proteins
fold: PGBD-like
superfamily: PGBD-like
family: MMP N-terminal domain
domain: Gelatinase A (MMP-2)
species: Human (Homo sapiens) [TaxId: 9606]