HHSEARCH alignment of GI: 254780350 and SCOP domain: d1l6ja1

Alignment

Probab=98.11  E-value=2.5e-06  Score=55.92  Aligned_cols=59  Identities=27%  Similarity=0.221  Sum_probs=49.4

Q ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC
Q ss_conf             8248999999998198665678776457899999999999808887870299999884489
Q gi|254780350|r  108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP  168 (431)
Q Consensus       108 ~~~V~~Lr~RL~~~Gdl~~~~~~~~~yD~~l~~AVk~FQ~rhGL~~DGvig~~Tl~aLN~~  168 (431)
                      -.++...+.-|...||++..  .....+..+.+|||.||+-.||++||.+|++|+++|+.|
T Consensus        11 ~~d~~~a~~yL~~fGYl~~~--~~~~~~~~~~~AIk~fQ~f~gL~vTG~lD~~T~~~M~~p   69 (77)
T d1l6ja1          11 LTDRQLAEEYLYRYGYTRVA--EMRGESKSLGPALLLLQKQLSLPETGELDSATLKAMRTP   69 (77)
T ss_dssp             CCHHHHHHHHHHHTTCC-------------CHHHHHHHHHHHTCCCCSSCCHHHHHHHTSC
T ss_pred             CCHHHHHHHHHHHCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC
T ss_conf             10699999999983899877--766451999999999999839998787699999988447

SCOP domain information

class: All alpha proteins
fold: PGBD-like
superfamily: PGBD-like
family: MMP N-terminal domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]