RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780350|ref|YP_003064763.1| hypothetical protein CLIBASIA_01175 [Candidatus Liberibacter asiaticus str. psy62] (431 letters) >d1lbua1 a.20.1.1 (A:1-83) Zn2+ DD-carboxypeptidase, N-terminal domain {Streptomyces albus G [TaxId: 1962]} Length = 83 Score = 54.6 bits (131), Expect = 1e-08 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 4/73 (5%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L G+S +V++L+ R+ + F ++AV+ FQ +GL Sbjct: 6 WS----GTLSEGSSGEAVRQLQIRVAGYPGTGAQLAIDGQFGPATKAAVQRFQSAYGLAA 61 Query: 154 SGMVDSSTLEAMN 166 G+ +T + Sbjct: 62 DGIAGPATFNKIY 74 >d1l6ja1 a.20.1.2 (A:29-105) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} Length = 77 Score = 39.1 bits (91), Expect = 6e-04 Identities = 12/35 (34%), Positives = 19/35 (54%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + A+ L Q + L +G +DS+TL+AM P Sbjct: 35 ESKSLGPALLLLQKQLSLPETGELDSATLKAMRTP 69 >d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 67 Score = 36.3 bits (84), Expect = 0.005 Identities = 11/31 (35%), Positives = 15/31 (48%) Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V +K Q GL +G D+ TL+ M P Sbjct: 29 VVEKLKQMQEFFGLKVTGKPDAETLKVMKQP 59 >d1slma1 a.20.1.2 (A:16-80) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]} Length = 65 Score = 35.9 bits (83), Expect = 0.007 Identities = 12/31 (38%), Positives = 17/31 (54%) Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V ++ Q GL+ +G +DS TLE M P Sbjct: 28 VVKKIREMQKFLGLEVTGKLDSDTLEVMRKP 58 >d1eaka1 a.20.1.2 (A:32-107) Gelatinase A (MMP-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Score = 34.4 bits (79), Expect = 0.019 Identities = 10/31 (32%), Positives = 17/31 (54%) Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++ +K Q GL +G +D +T+E M P Sbjct: 39 LKDTLKKMQKFFGLPQTGDLDQNTIETMRKP 69 >d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO reductase) {Rhodobacter sphaeroides [TaxId: 1063]} Length = 622 Score = 33.5 bits (75), Expect = 0.033 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 8/73 (10%) Query: 253 KDMMALLRQ-DPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFI----FRQDPGKI 305 +D M + +K + E F E V++ E NF+ FR+DP Sbjct: 529 RDEMGWISSFYEAAVKQAEFKNVAMPSFEDFWSEGIVEFPITEGANFVRYADFREDPLFN 588 Query: 306 N-AMASTKIEFYS 317 S IE YS Sbjct: 589 PLGTPSGLIEIYS 601 >d1y7ma1 b.160.1.1 (A:49-164) Hypothetical protein YkuD, C-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 116 Score = 31.3 bits (70), Expect = 0.14 Identities = 14/61 (22%), Positives = 22/61 (36%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + V+I A +L N +V + VG++ QTP I NP + Sbjct: 10 IAVSIGAKTLTLSLNNRVMKTYPIAVGKILTQTPTGEFYIINRQRNPGGPFGAYWLSLSA 69 Query: 256 M 256 Sbjct: 70 A 70 >d1zata1 b.160.1.1 (A:339-466) L,D-transpeptidase, C-terminal, catalytic domain {Enterococcus faecium [TaxId: 1352]} Length = 128 Score = 29.4 bits (65), Expect = 0.55 Identities = 9/56 (16%), Positives = 21/56 (37%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 Y+ V++ + ++GKV L + ++ G+ TP + + Sbjct: 6 YIEVDLENQHMWYYKDGKVALETDIVSGKPTTPTPAGVFYVWNKEEDATLKGTNDD 61 >d1tmoa2 c.81.1.1 (A:5-631) Trimethylamine N-oxide reductase {Shewanella massilia [TaxId: 76854]} Length = 627 Score = 28.1 bits (61), Expect = 1.3 Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 5/70 (7%) Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI----FRQDPGKIN-A 307 M L K N + F ++ + + + FR DP Sbjct: 537 MGEMEWLETLYNECKAANAGKFEMPDFATFWKQGYVHFGDGEVWTRHADFRNDPEINPLG 596 Query: 308 MASTKIEFYS 317 S IE +S Sbjct: 597 TPSGLIEIFS 606 >d1kzfa_ d.108.1.3 (A:) Acyl-homoserinelactone synthase EsaI {Pantoea stewartii subsp. stewartii [TaxId: 66271]} Length = 210 Score = 25.8 bits (56), Expect = 7.2 Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 16/95 (16%) Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP------------PNFIFRQDP 302 M+ L + L+ + + K+ F + + W +I Sbjct: 1 MLELFDVSYEELQTTRSEELYKLRKKTFSDRLGWEVICSQGMESDEFDGPGTRYILGICE 60 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 G++ F S + M F++V Sbjct: 61 GQLVCSVR----FTSLDRPNMITHTFQHCFSDVTL 91 >d2igsa1 d.2.1.11 (A:4-215) Hypothetical protein PA2222 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 Score = 25.8 bits (56), Expect = 7.9 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 16/67 (23%) Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 + T +AM +P D IK L+ +GLR ++ P S + K G Sbjct: 152 RTLTPGTWQAMTLPED------------IKALVGPGVGLR---LDAPNFS-DVFNTIKSG 195 Query: 215 LRSTVIV 221 LR T V Sbjct: 196 LRYTTAV 202 >d2ajfa1 d.92.1.5 (A:19-615) Angiotensin converting enzyme 2, ACE2 {Human (Homo sapiens) [TaxId: 9606]} Length = 597 Score = 25.5 bits (55), Expect = 9.4 Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 3/29 (10%) Query: 72 KETIAQTEKAIAFYQDILSRGG---WPEL 97 K I+ + +A ++L G W Sbjct: 523 KCDISNSTEAGQKLFNMLRLGKSEPWTLA 551 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.139 0.414 Gapped Lambda K H 0.267 0.0538 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,706,008 Number of extensions: 84359 Number of successful extensions: 210 Number of sequences better than 10.0: 1 Number of HSP's gapped: 210 Number of HSP's successfully gapped: 18 Length of query: 431 Length of database: 2,407,596 Length adjustment: 88 Effective length of query: 343 Effective length of database: 1,199,356 Effective search space: 411379108 Effective search space used: 411379108 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.0 bits)