RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780350|ref|YP_003064763.1| hypothetical protein
CLIBASIA_01175 [Candidatus Liberibacter asiaticus str. psy62]
         (431 letters)



>d1lbua1 a.20.1.1 (A:1-83) Zn2+ DD-carboxypeptidase, N-terminal
           domain {Streptomyces albus G [TaxId: 1962]}
          Length = 83

 Score = 54.6 bits (131), Expect = 1e-08
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 94  WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153
           W       L  G+S  +V++L+ R+           +   F    ++AV+ FQ  +GL  
Sbjct: 6   WS----GTLSEGSSGEAVRQLQIRVAGYPGTGAQLAIDGQFGPATKAAVQRFQSAYGLAA 61

Query: 154 SGMVDSSTLEAMN 166
            G+   +T   + 
Sbjct: 62  DGIAGPATFNKIY 74


>d1l6ja1 a.20.1.2 (A:29-105) Gelatinase B (MMP-9) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 77

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168
               +  A+ L Q +  L  +G +DS+TL+AM  P
Sbjct: 35  ESKSLGPALLLLQKQLSLPETGELDSATLKAMRTP 69


>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 67

 Score = 36.3 bits (84), Expect = 0.005
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168
           V   +K  Q   GL  +G  D+ TL+ M  P
Sbjct: 29  VVEKLKQMQEFFGLKVTGKPDAETLKVMKQP 59


>d1slma1 a.20.1.2 (A:16-80) Stromelysin-1 (MMP-3) {Human (Homo
           sapiens), fibroblast [TaxId: 9606]}
          Length = 65

 Score = 35.9 bits (83), Expect = 0.007
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168
           V   ++  Q   GL+ +G +DS TLE M  P
Sbjct: 28  VVKKIREMQKFLGLEVTGKLDSDTLEVMRKP 58


>d1eaka1 a.20.1.2 (A:32-107) Gelatinase A (MMP-2) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 76

 Score = 34.4 bits (79), Expect = 0.019
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168
           ++  +K  Q   GL  +G +D +T+E M  P
Sbjct: 39  LKDTLKKMQKFFGLPQTGDLDQNTIETMRKP 69


>d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO
           reductase) {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 622

 Score = 33.5 bits (75), Expect = 0.033
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 8/73 (10%)

Query: 253 KDMMALLRQ-DPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFI----FRQDPGKI 305
           +D M  +       +K      +     E F  E  V++   E  NF+    FR+DP   
Sbjct: 529 RDEMGWISSFYEAAVKQAEFKNVAMPSFEDFWSEGIVEFPITEGANFVRYADFREDPLFN 588

Query: 306 N-AMASTKIEFYS 317
                S  IE YS
Sbjct: 589 PLGTPSGLIEIYS 601


>d1y7ma1 b.160.1.1 (A:49-164) Hypothetical protein YkuD, C-terminal
           domain {Bacillus subtilis [TaxId: 1423]}
          Length = 116

 Score = 31.3 bits (70), Expect = 0.14
 Identities = 14/61 (22%), Positives = 22/61 (36%)

Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255
           + V+I A +L    N +V     + VG++  QTP     I     NP        +    
Sbjct: 10  IAVSIGAKTLTLSLNNRVMKTYPIAVGKILTQTPTGEFYIINRQRNPGGPFGAYWLSLSA 69

Query: 256 M 256
            
Sbjct: 70  A 70


>d1zata1 b.160.1.1 (A:339-466) L,D-transpeptidase, C-terminal,
           catalytic domain {Enterococcus faecium [TaxId: 1352]}
          Length = 128

 Score = 29.4 bits (65), Expect = 0.55
 Identities = 9/56 (16%), Positives = 21/56 (37%)

Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250
           Y+ V++    +   ++GKV L + ++ G+    TP     +     +         
Sbjct: 6   YIEVDLENQHMWYYKDGKVALETDIVSGKPTTPTPAGVFYVWNKEEDATLKGTNDD 61


>d1tmoa2 c.81.1.1 (A:5-631) Trimethylamine N-oxide reductase
           {Shewanella massilia [TaxId: 76854]}
          Length = 627

 Score = 28.1 bits (61), Expect = 1.3
 Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 5/70 (7%)

Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI----FRQDPGKIN-A 307
              M  L       K  N    +      F ++   +  +   +     FR DP      
Sbjct: 537 MGEMEWLETLYNECKAANAGKFEMPDFATFWKQGYVHFGDGEVWTRHADFRNDPEINPLG 596

Query: 308 MASTKIEFYS 317
             S  IE +S
Sbjct: 597 TPSGLIEIFS 606


>d1kzfa_ d.108.1.3 (A:) Acyl-homoserinelactone synthase EsaI
           {Pantoea stewartii subsp. stewartii [TaxId: 66271]}
          Length = 210

 Score = 25.8 bits (56), Expect = 7.2
 Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 16/95 (16%)

Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP------------PNFIFRQDP 302
           M+ L     + L+      + +  K+ F + + W                   +I     
Sbjct: 1   MLELFDVSYEELQTTRSEELYKLRKKTFSDRLGWEVICSQGMESDEFDGPGTRYILGICE 60

Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337
           G++         F S +   M        F++V  
Sbjct: 61  GQLVCSVR----FTSLDRPNMITHTFQHCFSDVTL 91


>d2igsa1 d.2.1.11 (A:4-215) Hypothetical protein PA2222 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 212

 Score = 25.8 bits (56), Expect = 7.9
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 16/67 (23%)

Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214
             +   T +AM +P D            IK L+   +GLR   ++ P  S +     K G
Sbjct: 152 RTLTPGTWQAMTLPED------------IKALVGPGVGLR---LDAPNFS-DVFNTIKSG 195

Query: 215 LRSTVIV 221
           LR T  V
Sbjct: 196 LRYTTAV 202


>d2ajfa1 d.92.1.5 (A:19-615) Angiotensin converting enzyme 2, ACE2
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 597

 Score = 25.5 bits (55), Expect = 9.4
 Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 3/29 (10%)

Query: 72  KETIAQTEKAIAFYQDILSRGG---WPEL 97
           K  I+ + +A     ++L  G    W   
Sbjct: 523 KCDISNSTEAGQKLFNMLRLGKSEPWTLA 551


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,706,008
Number of extensions: 84359
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 18
Length of query: 431
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 343
Effective length of database: 1,199,356
Effective search space: 411379108
Effective search space used: 411379108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)