HHsearch alignment for GI: 254780351 and conserved domain: CHL00180

>CHL00180 rbcR LysR transcriptional regulator; Provisional.
Probab=97.28  E-value=0.0024  Score=41.37  Aligned_cols=75  Identities=15%  Similarity=0.093  Sum_probs=56.4

Q ss_pred             CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC-C--CEEEEECCCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf             99999999999932179688999998547710567999999977-8--87886361007105644578899999999999
Q gi|254780351|r   54 DVNAVQALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL-G--FIKHQRSRIDKRSIRISLTQSGKEIAETISQL  130 (171)
Q Consensus        54 ~l~~~q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~-G--~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~  130 (171)
T Consensus         4 ~~tL~qL~~F~~va~~g-sft~AA~~L~isQpavS~~I~~LE~~lg~~Lf~R-------~~r~v~LT~aG~~l~~~a~~i   75 (307)
T CHL00180          4 PFTLDQLRILKAIASEG-SFKKAAESLYVSQPAVSLQIQNLEKQLNIPLFDR-------GGRKALLTEAGHLLLRYGERI   75 (307)
T ss_pred             CCCHHHHHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEE-------CCCCEEECHHHHHHHHHHHHH
T ss_conf             84899999999999809-9999999988887899999999999869992899-------899101098799999989999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780351|r  131 YQRHIE  136 (171)
Q Consensus       131 ~~~~~~  136 (171)
T Consensus        76 l~~~~~   81 (307)
T CHL00180         76 LALCEE   81 (307)
T ss_pred             HHHHHH
T ss_conf             999999