HHsearch alignment for GI: 254780351 and conserved domain: CHL00180
>CHL00180 rbcR LysR transcriptional regulator; Provisional.
Probab=97.28 E-value=0.0024 Score=41.37 Aligned_cols=75 Identities=15% Similarity=0.093 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC-C--CEEEEECCCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 99999999999932179688999998547710567999999977-8--87886361007105644578899999999999
Q gi|254780351|r 54 DVNAVQALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL-G--FIKHQRSRIDKRSIRISLTQSGKEIAETISQL 130 (171)
Q Consensus 54 ~l~~~q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~-G--~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 130 (171)
T Consensus 4 ~~tL~qL~~F~~va~~g-sft~AA~~L~isQpavS~~I~~LE~~lg~~Lf~R-------~~r~v~LT~aG~~l~~~a~~i 75 (307)
T CHL00180 4 PFTLDQLRILKAIASEG-SFKKAAESLYVSQPAVSLQIQNLEKQLNIPLFDR-------GGRKALLTEAGHLLLRYGERI 75 (307)
T ss_pred CCCHHHHHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEE-------CCCCEEECHHHHHHHHHHHHH
T ss_conf 84899999999999809-9999999988887899999999999869992899-------899101098799999989999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780351|r 131 YQRHIE 136 (171)
Q Consensus 131 ~~~~~~ 136 (171)
T Consensus 76 l~~~~~ 81 (307)
T CHL00180 76 LALCEE 81 (307)
T ss_pred HHHHHH
T ss_conf 999999