HHsearch alignment for GI: 254780351 and conserved domain: COG1497

>COG1497 Predicted transcriptional regulator [Transcription].
Probab=97.80  E-value=0.00033  Score=46.93  Aligned_cols=70  Identities=21%  Similarity=0.274  Sum_probs=57.0

Q ss_pred             CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHH-HHHHHH
Q ss_conf             9999999999993217968899999854771056799999997788788636100710564457889999-999999
Q gi|254780351|r   54 DVNAVQALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEI-AETISQ  129 (171)
Q Consensus        54 ~l~~~q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT~~G~~~-~~~~~~  129 (171)
T Consensus         9 ~~t~fqIL~ei~~~qp~v~q~eIA~~lgiT~QaVsehiK~Lv~eG~i~~-----~gR~~Y-~iTkkG~e~l~~~~~d   79 (260)
T COG1497           9 NLTRFQILSEIAVRQPRVKQKEIAKKLGITLQAVSEHIKELVKEGLIEK-----EGRGEY-EITKKGAEWLLEQLSD   79 (260)
T ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEE-----CCCEEE-EEEHHHHHHHHHHHHH
T ss_conf             3159899999997588778889998709879999999999986646661-----487258-9726689999999999