HHsearch alignment for GI: 254780351 and conserved domain: COG1777
>COG1777 Predicted transcriptional regulators [Transcription].
Probab=92.31 E-value=0.28 Score=28.17 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=47.2
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCC------------CEEEEEECHHH
Q ss_conf 999999932179688999998547710567999999977887886361007------------10564457889
Q gi|254780351|r 59 QALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDK------------RSIRISLTQSG 120 (171)
Q Consensus 59 q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~------------R~~~i~LT~~G 120 (171)
T Consensus 17 RR~Il~lLt~~p~yvsEiS~~lgvsqkAVl~HL~~LE~AGlveS~ie~~~Rg~~rKYY~Is~~~rleV~lsp~~ 90 (217)
T COG1777 17 RRRILQLLTRRPCYVSEISRELGVSQKAVLKHLRILERAGLVESRIEKIPRGRPRKYYMISRNLRLEVTLSPNF 90 (217)
T ss_pred HHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCEEECCCCEEEEEEECCCC
T ss_conf 99999998547139998776608678999999999998587121203332688762265067707999964762