HHsearch alignment for GI: 254780351 and conserved domain: COG2390

>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].
Probab=96.11  E-value=0.016  Score=36.06  Aligned_cols=47  Identities=21%  Similarity=0.013  Sum_probs=40.0

Q ss_pred             HHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCE
Q ss_conf             93217968899999854771056799999997788788636100710
Q gi|254780351|r   65 NIGDLELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRS  111 (171)
Q Consensus        65 ~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~  111 (171)
T Consensus        21 lYY~~gltQ~eIA~~LgiSR~~v~rlL~~Ar~~GiV~I~i~~~~~~~   67 (321)
T COG2390          21 LYYVEGLTQSEIAERLGISRATVSRLLAKAREEGIVKISINSPVEGC   67 (321)
T ss_pred             HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCCH
T ss_conf             99846887999998839889999999999998793899967987653