HHsearch alignment for GI: 254780351 and conserved domain: COG3327

>COG3327 PaaX Phenylacetic acid-responsive transcriptional repressor [Transcription].
Probab=93.81  E-value=0.16  Score=29.62  Aligned_cols=60  Identities=15%  Similarity=0.259  Sum_probs=46.2

Q ss_pred             CCCHH---HHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHH-HHHHH
Q ss_conf             96889---99998547710567999999977887886361007105644578899999999-99999
Q gi|254780351|r   70 ELTAG---ELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETI-SQLYQ  132 (171)
Q Consensus        70 ~~t~~---eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~-~~~~~  132 (171)
T Consensus        25 ~Iw~gsLI~il~~fG~sE~~vRaal~Rm~kaG~l~~er--~grks~Y-~LSDkgl~r~~~a~~riy~   88 (291)
T COG3327          25 WIWIGSLIQILAEFGISETTVRAALSRMVKAGWLVGER--EGRKSFY-RLSDKGLARQRRAARRIYP   88 (291)
T ss_pred             EEEHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHEEE--CCCCCCE-EECHHHHHHHHHHHHHHCC
T ss_conf             35487899999971942788999999987422010000--4663302-1058899999987666427