HHsearch alignment for GI: 254780351 and conserved domain: COG3327
>COG3327 PaaX Phenylacetic acid-responsive transcriptional repressor [Transcription].
Probab=93.81 E-value=0.16 Score=29.62 Aligned_cols=60 Identities=15% Similarity=0.259 Sum_probs=46.2
Q ss_pred CCCHH---HHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHH-HHHHH
Q ss_conf 96889---99998547710567999999977887886361007105644578899999999-99999
Q gi|254780351|r 70 ELTAG---ELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETI-SQLYQ 132 (171)
Q Consensus 70 ~~t~~---eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~-~~~~~ 132 (171)
T Consensus 25 ~Iw~gsLI~il~~fG~sE~~vRaal~Rm~kaG~l~~er--~grks~Y-~LSDkgl~r~~~a~~riy~ 88 (291)
T COG3327 25 WIWIGSLIQILAEFGISETTVRAALSRMVKAGWLVGER--EGRKSFY-RLSDKGLARQRRAARRIYP 88 (291)
T ss_pred EEEHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHEEE--CCCCCCE-EECHHHHHHHHHHHHHHCC
T ss_conf 35487899999971942788999999987422010000--4663302-1058899999987666427