HHsearch alignment for GI: 254780351 and conserved domain: COG3888

>COG3888 Predicted transcriptional regulator [Transcription].
Probab=95.21  E-value=0.061  Score=32.41  Aligned_cols=47  Identities=23%  Similarity=0.198  Sum_probs=37.4

Q ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEC
Q ss_conf             7968899999854771056799999997788788636100710564457
Q gi|254780351|r   69 LELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLT  117 (171)
Q Consensus        69 ~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT  117 (171)
T Consensus        19 ~GI~Q~eIeel~GlSKStvSEaLs~LE~~giv~RrkvsG--Ks~rVwLa   65 (321)
T COG3888          19 EGIDQTEIEELMGLSKSTVSEALSELEKQGIVKRRKVSG--KSKRVWLA   65 (321)
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECC--CCEEEEEC
T ss_conf             776587889885745647999999988568056655057--53388620