HHsearch alignment for GI: 254780351 and conserved domain: COG5631

>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription].
Probab=98.22  E-value=0.00021  Score=48.22  Aligned_cols=139  Identities=17%  Similarity=0.206  Sum_probs=97.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC--CCCHHHHHHHHCCC-CCHHHHHHHHHH
Q ss_conf             307999999999999999999999999998502579999999999993217--96889999985477-105679999999
Q gi|254780351|r   19 NDISGLYVECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDL--ELTAGELRSRGYYL-GSNVSYNLKKLI   95 (171)
Q Consensus        19 ~~~~~~~~e~~~lv~rl~r~l~~~~~~~l~~~g~~~l~~~q~~~L~~~~~~--~~t~~eLa~~l~i~-~~tvs~~i~~Le   95 (171)
T Consensus        49 p~~sEvEyaL~~ay~Af~rW~v----rCmAaag~~~ls~~e~l~lH~irhrdR~K~laDic~~ln~eDth~itYslrKL~  124 (199)
T COG5631          49 PDVSEVEYALMRAYEAFGRWQV----RCMAAAGEFSLSGPENLLLHIIRHRDRPKSLADICQMLNREDTHNITYSLRKLL  124 (199)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH----HHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             6278999999999999889999----999985677776237788888761574156999999856332104799999998


Q ss_pred             HCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             778878863610071056445788999999999999999999985349998999999999999999985
Q gi|254780351|r   96 DLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDDFIAMNKLLQRLNRFWG  164 (171)
Q Consensus        96 ~~G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~~l~~~~~ls~ee~~~l~~~L~rler~~~  164 (171)
T Consensus       125 k~gLit~t~~g---kevTy~vTa~G~~acarYa~IRe~lLid~vt~~~e~~~~l~elArllr~mtG~ye  190 (199)
T COG5631         125 KGGLITRTGSG---KEVTYEVTALGHRACARYADIREVLLIDAVTRIPEMADKLEELARLLRLMTGIYE  190 (199)
T ss_pred             HCCCEECCCCC---CEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             55654237887---5578987155088999999999999884146786166689999999999988999