HHsearch alignment for GI: 254780351 and conserved domain: PRK03601
>PRK03601 transcriptional regulator HdfR; Provisional.
Probab=97.00 E-value=0.013 Score=36.80 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=49.4
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHH
Q ss_conf 999932179688999998547710567999999977---887886361007105644578899999999999999999
Q gi|254780351|r 62 LLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL---GFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIE 136 (171)
Q Consensus 62 ~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~---G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~ 136 (171)
T Consensus 8 ~F~~va~~-gsft~AA~~L~isQsavS~~Ik~LE~~LG~~Lf~R~~-------~~~~LT~~G~~l~~~A~~il~~~~~ 77 (275)
T PRK03601 8 TFLEVSRT-RHFGRAAESLYLTQSAVSFRIRQLENQLGVNLFTRHR-------NNIRLTAAGEKLLPYAETLMNTWQA 77 (275)
T ss_pred HHHHHHHH-CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-------CCEEECHHHHHHHHHHHHHHHHHHH
T ss_conf 99999980-9999999997898789999999999996983299879-------9432998899999999999999999