HHsearch alignment for GI: 254780351 and conserved domain: PRK09906
>PRK09906 DNA-binding transcriptional regulator HcaR; Provisional.
Probab=97.01 E-value=0.0072 Score=38.37 Aligned_cols=72 Identities=13% Similarity=0.154 Sum_probs=51.0
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC-CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999932179688999998547710567999999977-887886361007105644578899999999999999999
Q gi|254780351|r 59 QALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL-GFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIE 136 (171)
Q Consensus 59 q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~-G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~ 136 (171)
T Consensus 5 ~L~~F~~va~~-gs~s~AA~~L~iSQpalS~~I~~LE~~lG~~Lf~R~-----~r~v~LT~aG~~l~~~a~~il~~~~~ 77 (296)
T PRK09906 5 HLRYFVAVAEE-LNFTKAAEKLHTAQPSLSQQIKDLENCVGVPLLVRD-----KRKVALTAAGEVFLQDARLILEQAEK 77 (296)
T ss_pred HHHHHHHHHHH-CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-----CCCCEECHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999980-999999999888878999999999998598879988-----99512787089999999999999999