HHsearch alignment for GI: 254780351 and conserved domain: PRK11014
>PRK11014 transcriptional repressor NsrR; Provisional.
Probab=93.79 E-value=0.14 Score=30.04 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 9688999998547710567999999977887886361007105644578899999999999
Q gi|254780351|r 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQL 130 (171)
Q Consensus 70 ~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 130 (171)
T Consensus 25 ~~~~~eIae~~~Ip~~~L~KIl~~L~~aGlv~S~RG~~GG--y~Lar~p~~Itl~dVi~ai 83 (141)
T PRK11014 25 MTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGKNGG--IRLGKPASTIRIGDVVREL 83 (141)
T ss_pred EECHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC--EECCCCHHHCCHHHHHHHH
T ss_conf 4749999998794999999999999887956720479988--3214898879799999994