HHsearch alignment for GI: 254780351 and conserved domain: PRK11139

>PRK11139 DNA-binding transcriptional activator GcvA; Provisional.
Probab=97.11  E-value=0.0075  Score=38.25  Aligned_cols=71  Identities=14%  Similarity=0.149  Sum_probs=53.7

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHH
Q ss_conf             999999932179688999998547710567999999977---88788636100710564457889999999999999999
Q gi|254780351|r   59 QALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL---GFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHI  135 (171)
Q Consensus        59 q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~---G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~  135 (171)
T Consensus        10 ~L~~F~aVa~~g-S~s~AA~~L~~sqsaVS~~I~~LE~~lG~~Lf~R~-------~r~~~lT~~G~~l~~~a~~il~~~~   81 (295)
T PRK11139         10 ALRAFEAAARHL-SFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRR-------NRSLLLTEEGQRYFLDIREAFDQLA   81 (295)
T ss_pred             HHHHHHHHHHHC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEC-------CCCEEECHHHHHHHHHHHHHHHHHH
T ss_conf             999999999839-99999999886988999999999998598448988-------9953680999999999999999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780351|r  136 ES  137 (171)
Q Consensus       136 ~~  137 (171)
T Consensus        82 ~~   83 (295)
T PRK11139         82 EA   83 (295)
T ss_pred             HH
T ss_conf             99