HHsearch alignment for GI: 254780351 and conserved domain: PRK11139
>PRK11139 DNA-binding transcriptional activator GcvA; Provisional.
Probab=97.11 E-value=0.0075 Score=38.25 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=53.7
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHH
Q ss_conf 999999932179688999998547710567999999977---88788636100710564457889999999999999999
Q gi|254780351|r 59 QALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL---GFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHI 135 (171)
Q Consensus 59 q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~---G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~ 135 (171)
T Consensus 10 ~L~~F~aVa~~g-S~s~AA~~L~~sqsaVS~~I~~LE~~lG~~Lf~R~-------~r~~~lT~~G~~l~~~a~~il~~~~ 81 (295)
T PRK11139 10 ALRAFEAAARHL-SFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRR-------NRSLLLTEEGQRYFLDIREAFDQLA 81 (295)
T ss_pred HHHHHHHHHHHC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEC-------CCCEEECHHHHHHHHHHHHHHHHHH
T ss_conf 999999999839-99999999886988999999999998598448988-------9953680999999999999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780351|r 136 ES 137 (171)
Q Consensus 136 ~~ 137 (171)
T Consensus 82 ~~ 83 (295)
T PRK11139 82 EA 83 (295)
T ss_pred HH
T ss_conf 99