HHsearch alignment for GI: 254780351 and conserved domain: PRK11233
>PRK11233 nitrogen assimilation transcriptional regulator; Provisional.
Probab=97.11 E-value=0.0065 Score=38.62 Aligned_cols=71 Identities=10% Similarity=0.081 Sum_probs=52.8
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHH
Q ss_conf 999999932179688999998547710567999999977---88788636100710564457889999999999999999
Q gi|254780351|r 59 QALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL---GFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHI 135 (171)
Q Consensus 59 q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~---G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~ 135 (171)
T Consensus 5 qLr~F~aVae~g-s~s~AA~~L~isQpavS~~I~~LE~~LG~~Lf~R~-------~r~v~lT~~G~~l~~~a~~il~~~~ 76 (305)
T PRK11233 5 RLKYFVKIVDIG-SLTQAAEVLHIAQPALSQQVATLEGELNQQLLIRT-------KRGVTPTEAGKILYTHARAILRQCE 76 (305)
T ss_pred HHHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCEEECHHHHHHHHHHHHHHHHHH
T ss_conf 999999999809-99999999889878999999999999699779984-------9917798838999999999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780351|r 136 ES 137 (171)
Q Consensus 136 ~~ 137 (171)
T Consensus 77 ~~ 78 (305)
T PRK11233 77 QA 78 (305)
T ss_pred HH
T ss_conf 99