HHsearch alignment for GI: 254780351 and conserved domain: PRK11233

>PRK11233 nitrogen assimilation transcriptional regulator; Provisional.
Probab=97.11  E-value=0.0065  Score=38.62  Aligned_cols=71  Identities=10%  Similarity=0.081  Sum_probs=52.8

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHH
Q ss_conf             999999932179688999998547710567999999977---88788636100710564457889999999999999999
Q gi|254780351|r   59 QALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL---GFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHI  135 (171)
Q Consensus        59 q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~---G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~  135 (171)
T Consensus         5 qLr~F~aVae~g-s~s~AA~~L~isQpavS~~I~~LE~~LG~~Lf~R~-------~r~v~lT~~G~~l~~~a~~il~~~~   76 (305)
T PRK11233          5 RLKYFVKIVDIG-SLTQAAEVLHIAQPALSQQVATLEGELNQQLLIRT-------KRGVTPTEAGKILYTHARAILRQCE   76 (305)
T ss_pred             HHHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCEEECHHHHHHHHHHHHHHHHHH
T ss_conf             999999999809-99999999889878999999999999699779984-------9917798838999999999999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780351|r  136 ES  137 (171)
Q Consensus       136 ~~  137 (171)
T Consensus        77 ~~   78 (305)
T PRK11233         77 QA   78 (305)
T ss_pred             HH
T ss_conf             99