HHsearch alignment for GI: 254780351 and conserved domain: PRK12681

>PRK12681 cysB transcriptional regulator CysB; Reviewed.
Probab=97.38  E-value=0.0016  Score=42.48  Aligned_cols=71  Identities=15%  Similarity=0.222  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC-C--CEEEEECCCCCCEEEE-EECHHHHHHHHHHHHHHHH
Q ss_conf             9999999932179688999998547710567999999977-8--8788636100710564-4578899999999999999
Q gi|254780351|r   58 VQALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL-G--FIKHQRSRIDKRSIRI-SLTQSGKEIAETISQLYQR  133 (171)
Q Consensus        58 ~q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~-G--~i~r~~~~~D~R~~~i-~LT~~G~~~~~~~~~~~~~  133 (171)
T Consensus         4 ~QLryf~~va~~~~n~t~AA~~L~iSQPavS~qIk~LE~eLGv~LF~R-------~gr~l~~LT~aG~~l~~~a~~iL~~   76 (324)
T PRK12681          4 QQLRYIVEVVNHNLNVSATAESLYTSQPGISKQVRMLEDELGIQIFAR-------SGKHLTQVTPAGEEIIRIAREILSK   76 (324)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEE-------CCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             999999999976999999999978977799999999999849961898-------8998886098899999999999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780351|r  134 HI  135 (171)
Q Consensus       134 ~~  135 (171)
T Consensus        77 ~~   78 (324)
T PRK12681         77 VE   78 (324)
T ss_pred             HH
T ss_conf             99