HHsearch alignment for GI: 254780351 and conserved domain: PRK13824
>PRK13824 replication initiation protein RepC; Provisional.
Probab=91.18 E-value=1.2 Score=24.01 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=47.1
Q ss_pred CCCCCHHHHHHHHHH-H---------CC-C---CCHHHHHHHH-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEE
Q ss_conf 579999999999993-2---------17-9---6889999985-477105679999999778878863610071056
Q gi|254780351|r 52 RSDVNAVQALLLFNI-G---------DL-E---LTAGELRSRG-YYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIR 113 (171)
Q Consensus 52 ~~~l~~~q~~~L~~~-~---------~~-~---~t~~eLa~~l-~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~ 113 (171)
T Consensus 50 ~lgl~dr~laVL~aLlsf~p~~~l~~~~~liVfpSN~~L~~R~~Gm~~sTlRRhLa~LveaGLI~rrDSpNGKRYar 126 (404)
T PRK13824 50 LLGVSDRALAVLNALLSFYPETELSEEAGLVVFPSNAQLSLRAHGMAGATLRRHLAALVEAGLIIRRDSPNGKRYAR 126 (404)
T ss_pred HCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCE
T ss_conf 76998768999999981188455788987632228999999875998789999999999769556123889887113