HHsearch alignment for GI: 254780351 and conserved domain: PRK13824

>PRK13824 replication initiation protein RepC; Provisional.
Probab=91.18  E-value=1.2  Score=24.01  Aligned_cols=62  Identities=21%  Similarity=0.238  Sum_probs=47.1

Q ss_pred             CCCCCHHHHHHHHHH-H---------CC-C---CCHHHHHHHH-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEE
Q ss_conf             579999999999993-2---------17-9---6889999985-477105679999999778878863610071056
Q gi|254780351|r   52 RSDVNAVQALLLFNI-G---------DL-E---LTAGELRSRG-YYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIR  113 (171)
Q Consensus        52 ~~~l~~~q~~~L~~~-~---------~~-~---~t~~eLa~~l-~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~  113 (171)
T Consensus        50 ~lgl~dr~laVL~aLlsf~p~~~l~~~~~liVfpSN~~L~~R~~Gm~~sTlRRhLa~LveaGLI~rrDSpNGKRYar  126 (404)
T PRK13824         50 LLGVSDRALAVLNALLSFYPETELSEEAGLVVFPSNAQLSLRAHGMAGATLRRHLAALVEAGLIIRRDSPNGKRYAR  126 (404)
T ss_pred             HCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCE
T ss_conf             76998768999999981188455788987632228999999875998789999999999769556123889887113