HHsearch alignment for GI: 254780351 and conserved domain: TIGR00331
>TIGR00331 hrcA heat-inducible transcription repressor HrcA; InterPro: IPR002571 In response to elevated temperature, both prokaryotic and eukaryotic cells increase expression of a small family of chaperones. The regulatory network that functions to control the transcription of the heat shock genes in bacteria includes unique structural motifs in the promoter region of these genes and the expression of alternate sigma factors. One of the conserved structural motifs, the inverted repeat CIRCE element, is found in the 5' region of many heat shock operons . For Bacillus subtilis three classes of heat shock genes regulated by different mechanisms have been described. Regulation of class I heat shock genes (dnaK and groE operons) involves an inverted repeat (CIRCE element) which most probably serves as an operator for a repressor .; GO: 0006355 regulation of transcription DNA-dependent.
Probab=92.33 E-value=0.92 Score=24.80 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=57.7
Q ss_pred CCCCCHHHHHHH--HCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 179688999998--547710567999999977887886361007105644578899999999999999999998534999
Q gi|254780351|r 68 DLELTAGELRSR--GYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLS 145 (171)
Q Consensus 68 ~~~~t~~eLa~~--l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~~l~~~~~ls 145 (171)
T Consensus 19 ~~PVGSk~L~~~~~l~~SSATIRN~Ma~LE~~Gfi~k~HtSsGR-----iPt~~GYRyYVd----------~l~~~~~~~ 83 (343)
T TIGR00331 19 GEPVGSKTLLEKYNLGLSSATIRNDMADLEELGFIEKPHTSSGR-----IPTDKGYRYYVD----------HLLKVDSLT 83 (343)
T ss_pred CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-----CHHHHHHHHHHH----------HHCCCCCCC
T ss_conf 89620476775617999970365779998750220047415787-----522300689999----------744788878
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999999985
Q gi|254780351|r 146 VDDFIAMNKLLQRLNRFWG 164 (171)
Q Consensus 146 ~ee~~~l~~~L~rler~~~ 164 (171)
T Consensus 84 ~~e~~~I~~~~~~~~~~~~ 102 (343)
T TIGR00331 84 EEEKRRIQNQLLQERFELE 102 (343)
T ss_pred HHHHHHHHHHHHHHHCCHH
T ss_conf 7899999998635312402