HHsearch alignment for GI: 254780351 and conserved domain: TIGR00738
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator); InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulphovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis strain PCC 6803 hypothetical protein slr0846. These are small proteins of 12 to 18 kD which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators..
Probab=95.45 E-value=0.039 Score=33.60 Aligned_cols=102 Identities=17% Similarity=0.262 Sum_probs=64.7
Q ss_pred HHHHHHHHH-CC-CCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHH--HHHHHHHHHHHH
Q ss_conf 999999932-17-96889999985477105679999999778878863610071056445788999--999999999999
Q gi|254780351|r 59 QALLLFNIG-DL-ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKE--IAETISQLYQRH 134 (171)
Q Consensus 59 q~~~L~~~~-~~-~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT~~G~~--~~~~~~~~~~~~ 134 (171)
T Consensus 12 ~al~~LA~~~~~~~v~~~~ia~~~~Is~~yL~K~l~~L~~~GlV~S~rG~~GG----Y~L~~~~~~I~~~dvv~a~-e~~ 86 (133)
T TIGR00738 12 RALLDLALNADEGPVSVKEIAERQGISRSYLEKVLRTLRKAGLVESVRGPGGG----YRLARPPEEITVGDVVRAV-EGS 86 (133)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCCCCC----CCCCCCHHHCCHHHHHHHH-CCC
T ss_conf 99999972268876078999988489987999999988770764211589856----3107753430498888753-685
Q ss_pred HHHHHHHCC-CCH---HHHHHHHHHHHHHHHHHHH
Q ss_conf 999985349-998---9999999999999999854
Q gi|254780351|r 135 IESIDKVGG-LSV---DDFIAMNKLLQRLNRFWGD 165 (171)
Q Consensus 135 ~~~l~~~~~-ls~---ee~~~l~~~L~rler~~~~ 165 (171)
T Consensus 87 ~~~~~c~~~~~c~~~~~~~C~~~~~w~~~~~~~~~ 121 (133)
T TIGR00738 87 LAPVQCIGGNGCHNVGEPVCLLHAVWRELEDAIED 121 (133)
T ss_pred CCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 10001445788864444422589999999999999