HHsearch alignment for GI: 254780351 and conserved domain: TIGR02036
>TIGR02036 dsdC D-serine deaminase transcriptional activator; InterPro: IPR011781 This family, part of the LysR family of transcriptional regulators, activates transcription of the gene for D-serine deaminase, dsdA. Trusted members of this family so far are found adjacent to dsdA and only in Gammaproteobacteria, including Escherichia coli, Vibrio cholerae, and Colwellia psychrerythraea..
Probab=90.92 E-value=0.13 Score=30.36 Aligned_cols=65 Identities=20% Similarity=0.164 Sum_probs=48.4
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHC-CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 688999998547710567999999977-8878863610071056445788999999999999999999985
Q gi|254780351|r 71 LTAGELRSRGYYLGSNVSYNLKKLIDL-GFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDK 140 (171)
Q Consensus 71 ~t~~eLa~~l~i~~~tvs~~i~~Le~~-G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~~l~~ 140 (171)
T Consensus 23 ~SFsLAAeELSltPSAiSHRIN~LEeElGI~LF~RsH-----RKveLT~EG~RiY~alkssl~~LNQEIld 88 (302)
T TIGR02036 23 QSFSLAAEELSLTPSAISHRINKLEEELGIKLFKRSH-----RKVELTKEGKRIYIALKSSLDSLNQEILD 88 (302)
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC-----CEEEECCCCCCHHHHHHHHHHHHCCEEEH
T ss_conf 3377888753167345777544335652144203356-----52564467740466778765431412100