HHsearch alignment for GI: 254780351 and conserved domain: TIGR02424
>TIGR02424 TF_pcaQ pca operon transcription factor PcaQ; InterPro: IPR012787 Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate . Members occur only in proteobacteria.; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0019619 protocatechuate catabolic process, 0045941 positive regulation of transcription.
Probab=92.72 E-value=0.23 Score=28.65 Aligned_cols=55 Identities=16% Similarity=0.133 Sum_probs=45.3
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHH---CCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 68899999854771056799999997---788788636100710564457889999999999999
Q gi|254780351|r 71 LTAGELRSRGYYLGSNVSYNLKKLID---LGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQ 132 (171)
Q Consensus 71 ~t~~eLa~~l~i~~~tvs~~i~~Le~---~G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~ 132 (171)
T Consensus 18 ~Sv~rAae~L~~tQPAvsKTlrELE~~LG~~L~eR~~~G-------iRlT~~G~~Fl~hAg~Sl~ 75 (300)
T TIGR02424 18 GSVKRAAEALHITQPAVSKTLRELEEILGTPLLERDRRG-------IRLTRYGEVFLRHAGASLA 75 (300)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEECCCC-------CCCCCCCHHHHHHHHHHHH
T ss_conf 899999986248810788999999987297451147863-------5637221154666658999