HHsearch alignment for GI: 254780351 and conserved domain: TIGR03338
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=97.09 E-value=0.016 Score=36.07 Aligned_cols=91 Identities=9% Similarity=0.141 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 96889999985477105679999999778878863610071056445788999999999999999999985349998999
Q gi|254780351|r 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDDF 149 (171)
Q Consensus 70 ~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~~l~~~~~ls~ee~ 149 (171)
T Consensus 34 ~L~E~~La~~~gVSRtpvREAL~~L~~eGlv~~~~~~G---~~V~~~~~~~~~ei~~~R~~lE~~a~~~-aa~~~~~~~~ 109 (212)
T TIGR03338 34 KLNESDIAARLGVSRGPVREAFRALEEAGLVRNEKNRG---VFVREISLAEADEIYELRAVLDEIVGRR-LAARITPTQL 109 (212)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHEECCCC---EEEECCCHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHH
T ss_conf 81899999988969499999999999869633116776---1551176888878999999999999999-9874999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999985
Q gi|254780351|r 150 IAMNKLLQRLNRFWG 164 (171)
Q Consensus 150 ~~l~~~L~rler~~~ 164 (171)
T Consensus 110 ~~l~~~~~~~~~~~~ 124 (212)
T TIGR03338 110 KVLKGLLDAMEDAAK 124 (212)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999887