HHsearch alignment for GI: 254780351 and conserved domain: TIGR03418
>TIGR03418 chol_sulf_TF putative choline sulfate-utilization transcription factor. Members of this protein family are transcription factors of the LysR family. Their genes typically are divergently transcribed from choline-sulfatase genes. That enzyme makes choline, a precursor to the osmoprotectant glycine-betaine, available by hydrolysis of choline sulfate.
Probab=97.34 E-value=0.0038 Score=40.11 Aligned_cols=77 Identities=13% Similarity=0.072 Sum_probs=56.6
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHH
Q ss_conf 999999932179688999998547710567999999977---88788636100710564457889999999999999999
Q gi|254780351|r 59 QALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL---GFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHI 135 (171)
Q Consensus 59 q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~---G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~ 135 (171)
T Consensus 5 ~L~~F~~Va~~g-S~t~AA~~L~~sqsavS~~I~~LE~~lG~~Lf~R~-------~r~~~lT~aG~~l~~~a~~~l~~~~ 76 (291)
T TIGR03418 5 ALRVFESAARLA-SFTAAARELGSTQPAVSQQVKRLEEELGTPLFERG-------HRGIELTEDGQRLFEAVRAGLDTID 76 (291)
T ss_pred HHHHHHHHHHHC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEC-------CCCEEECHHHHHHHHHHHHHHHHHH
T ss_conf 999999999819-99999999887888999999999999699658977-------9954686889999999999999999
Q ss_pred HHHHHHCC
Q ss_conf 99985349
Q gi|254780351|r 136 ESIDKVGG 143 (171)
Q Consensus 136 ~~l~~~~~ 143 (171)
T Consensus 77 ~~~~~l~~ 84 (291)
T TIGR03418 77 LATAQLRA 84 (291)
T ss_pred HHHHHHHC
T ss_conf 99999855