HHsearch alignment for GI: 254780351 and conserved domain: cd00090
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=98.11 E-value=3e-05 Score=53.64 Aligned_cols=67 Identities=28% Similarity=0.304 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHH
Q ss_conf 99999999993217968899999854771056799999997788788636100710564457889999999
Q gi|254780351|r 56 NAVQALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAET 126 (171)
Q Consensus 56 ~~~q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT~~G~~~~~~ 126 (171)
T Consensus 6 ~~~r~~Il~~L~~~~~~~~eia~~l~is~~~vs~hL~~L~~~Gli~~~~~~---~~~~y~l~~-~~~~~~~ 72 (78)
T cd00090 6 DPTRLRILRLLLEGPLTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREG---RRVYYSLTD-AERLLAL 72 (78)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEC---CEEEEEECC-HHHHHHH
T ss_conf 999999999998489069999877784878999999999988986899988---999999799-9999999