HHsearch alignment for GI: 254780351 and conserved domain: cd00090

>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=98.11  E-value=3e-05  Score=53.64  Aligned_cols=67  Identities=28%  Similarity=0.304  Sum_probs=57.2

Q ss_pred             CHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHH
Q ss_conf             99999999993217968899999854771056799999997788788636100710564457889999999
Q gi|254780351|r   56 NAVQALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAET  126 (171)
Q Consensus        56 ~~~q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT~~G~~~~~~  126 (171)
T Consensus         6 ~~~r~~Il~~L~~~~~~~~eia~~l~is~~~vs~hL~~L~~~Gli~~~~~~---~~~~y~l~~-~~~~~~~   72 (78)
T cd00090           6 DPTRLRILRLLLEGPLTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREG---RRVYYSLTD-AERLLAL   72 (78)
T ss_pred             CHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEC---CEEEEEECC-HHHHHHH
T ss_conf             999999999998489069999877784878999999999988986899988---999999799-9999999