HHsearch alignment for GI: 254780351 and conserved domain: pfam01022

>pfam01022 HTH_5 Bacterial regulatory protein, arsR family. Members of this family contains a DNA binding 'helix-turn-helix' motif. This family includes other proteins which are not included in the Prosite definition.

Probab=97.18  E-value=0.00078  Score=44.56  Aligned_cols=45  Identities=29%  Similarity=0.306  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEE
Q ss_conf             999999999321796889999985477105679999999778878
Q gi|254780351|r   57 AVQALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDLGFIK  101 (171)
Q Consensus        57 ~~q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~  101 (171)
T Consensus         2 p~Rl~Il~~L~~~~~~v~el~~~l~~sq~~vS~HL~~L~~~GlV~   46 (47)
T pfam01022         2 PTRLKILYLLSEGELCVCELAEILGLSQSTVSHHLKKLREAGLVE   46 (47)
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf             589999999980899699999998958869999999998980968