HHsearch alignment for GI: 254780351 and conserved domain: pfam01325
>pfam01325 Fe_dep_repress Iron dependent repressor, N-terminal DNA binding domain. This family includes the Diphtheria toxin repressor. DNA binding is through a helix-turn-helix motif.
Probab=97.55 E-value=0.00018 Score=48.68 Aligned_cols=39 Identities=26% Similarity=0.144 Sum_probs=35.1
Q ss_pred HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEC
Q ss_conf 217968899999854771056799999997788788636
Q gi|254780351|r 67 GDLELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRS 105 (171)
Q Consensus 67 ~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~ 105 (171)
T Consensus 17 ~~~~v~~~~iA~~L~Vs~~SVt~mlkkL~~~GlV~~e~Y 55 (58)
T pfam01325 17 EKGVVKTKDLAERLNVSPSTVSEMLKKLEKDGYVVYEPY 55 (58)
T ss_pred CCCCEEHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECC
T ss_conf 699612999999959992529999999998899785326