HHsearch alignment for GI: 254780351 and conserved domain: pfam01418
>pfam01418 HTH_6 Helix-turn-helix domain, rpiR family. This domain contains a helix-turn-helix motif. The best characterized member of this family is RpiR, a regulator of the expression of rpiB gene.
Probab=92.08 E-value=0.36 Score=27.45 Aligned_cols=48 Identities=19% Similarity=0.052 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHCC-----CCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 9999999999993217-----96889999985477105679999999778878
Q gi|254780351|r 54 DVNAVQALLLFNIGDL-----ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIK 101 (171)
Q Consensus 54 ~l~~~q~~~L~~~~~~-----~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~ 101 (171)
T Consensus 13 ~lt~~e~~ia~yil~~~~~~~~~si~~lA~~~~vS~atv~Rf~kklG~~Gf~e 65 (106)
T pfam01418 13 KLTKSEKKIADYILASPDNAIHLSIAELAKAAGVSEASVVRFCRKLGFSGFSD 65 (106)
T ss_pred HCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHH
T ss_conf 64999999999999299999883399999896998999999999958998999