HHsearch alignment for GI: 254780351 and conserved domain: pfam05158
>pfam05158 RNA_pol_Rpc34 RNA polymerase Rpc34 subunit. Subunit specific to RNA Pol III, the tRNA specific polymerase. The C34 subunit of yeast RNA Pol III is part of a subcomplex of three subunits which have no counterpart in the other two nuclear RNA polymerases. This subunit interacts with TFIIIB70 and is therefore participates in Pol III recruitment.
Probab=92.25 E-value=0.76 Score=25.35 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=52.2
Q ss_pred CCCCCHHHHHHHHHHHC---CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCC-CEEEE
Q ss_conf 57999999999999321---79688999998547710567999999977887886361007-10564
Q gi|254780351|r 52 RSDVNAVQALLLFNIGD---LELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDK-RSIRI 114 (171)
Q Consensus 52 ~~~l~~~q~~~L~~~~~---~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~-R~~~i 114 (171)
T Consensus 78 ~~~l~~eE~lVY~~Ie~ag~~GIW~k~i~~~tnL~~~~l~K~LK~LEsk~lIKsVksV~~~~rKvYm 144 (313)
T pfam05158 78 KATLSDEESLVYSIIEESGNEGIWTRTIKNRTNLHQSVLKKCLKSLESKKYIKSVKSVKAPTRKMYM 144 (313)
T ss_pred HCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEE
T ss_conf 5289888999999998627677449999988099889999999999756861542145678705999