HHsearch alignment for GI: 254780351 and conserved domain: pfam07381

>pfam07381 DUF1495 Winged helix DNA-binding domain (DUF1495). This family consists of several hypothetical archaeal proteins of around 110 residues in length. The structure of this domain possesses a winged helix DNA-binding domain suggesting these proteins are bacterial transcription factors.
Probab=95.65  E-value=0.041  Score=33.50  Aligned_cols=63  Identities=27%  Similarity=0.317  Sum_probs=49.3

Q ss_pred             HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH----------HHHHCCCEE-EEECCCCCCEEEEEECHHHHHHHHH
Q ss_conf             99999321796889999985477105679999----------999778878-8636100710564457889999999
Q gi|254780351|r   61 LLLFNIGDLELTAGELRSRGYYLGSNVSYNLK----------KLIDLGFIK-HQRSRIDKRSIRISLTQSGKEIAET  126 (171)
Q Consensus        61 ~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~----------~Le~~G~i~-r~~~~~D~R~~~i~LT~~G~~~~~~  126 (171)
T Consensus        16 ~yL~~iyp~~~y~~eIsr~v~s~psNv~GaL~G~G~RY~~e~SLi~lGLV~~~~~~~---g~k~Y~lTe~Gk~i~~~   89 (90)
T pfam07381        16 VYLYSIYPEPTYLSEISRRVRSDPSNVLGALEGMGKRYNGESSLIELGLVTVREGNP---GTKVYKLTEEGKNIVDV   89 (90)
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHHHHCCCEEEEECCC---CEEEEEECCCHHHHHHC
T ss_conf             999971887578999988856792132577503564546314357617666773268---71588737312547642