HHsearch alignment for GI: 254780351 and conserved domain: pfam08279

>pfam08279 HTH_11 HTH domain. This family includes helix-turn-helix domains in a wide variety of proteins.

Probab=94.13  E-value=0.13  Score=30.20  Aligned_cols=34  Identities=18%  Similarity=0.162  Sum_probs=30.7

Q ss_pred             HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCE
Q ss_conf             2179688999998547710567999999977887
Q gi|254780351|r   67 GDLELTAGELRSRGYYLGSNVSYNLKKLIDLGFI  100 (171)
Q Consensus        67 ~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i  100 (171)
T Consensus        12 ~~~~vt~~~La~~l~VSr~TV~rdi~~L~~~G~~   45 (55)
T pfam08279        12 AREPISGQELAEKLGVSRRTIRRDIKALEALGVP   45 (55)
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf             6999189999999698899999999999988997