HHsearch alignment for GI: 254780351 and conserved domain: smart00419
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=96.44 E-value=0.0042 Score=39.89 Aligned_cols=35 Identities=29% Similarity=0.244 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 96889999985477105679999999778878863
Q gi|254780351|r 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQR 104 (171)
Q Consensus 70 ~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~ 104 (171)
T Consensus 8 ~lt~~~iA~~lG~tretvsR~l~~l~~~GlI~~~~ 42 (48)
T smart00419 8 PLTRQEIAELLGLTRETVSRTLKRLEKEGLISREG 42 (48)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC
T ss_conf 37999999997997999999999999889799789