HHsearch alignment for GI: 254780351 and conserved domain: smart00529
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=98.71 E-value=2.5e-07 Score=66.99 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=61.8
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 88999998547710567999999977887886361007105644578899999999999999999998534999899999
Q gi|254780351|r 72 TAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDDFIA 151 (171)
Q Consensus 72 t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~~l~~~~~ls~ee~~~ 151 (171)
T Consensus 1 R~~diA~~L~vs~~sVs~~l~~L~~~Gli~~~~y~------~i~LT~~G~~~A~~i~~rHr~le~fL~~~lgv~~~~a~~ 74 (96)
T smart00529 1 RTSEIAERLNVSPPTVTQMLKKLEKDGLVEYEPYR------GITLTEKGRRLARRLLRKHRLLERFLVDVLGVDEEEVHE 74 (96)
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 97889988499916799999999988898874998------978898799999999999999999999981999799999
Q ss_pred HH
Q ss_conf 99
Q gi|254780351|r 152 MN 153 (171)
Q Consensus 152 l~ 153 (171)
T Consensus 75 ~A 76 (96)
T smart00529 75 EA 76 (96)
T ss_pred HH
T ss_conf 99