RPSBLAST alignment of GI: 254780351 and protein with PDBid: 1ku9

>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 Length = 152

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 21/135 (15%), Positives = 60/135 (44%), Gaps = 4/135 (2%)

Query: 31  LVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLELTAGELRSRGYYLGSNVSYN 90
           ++E   + ++++  +  +  G +  +      +  + D  LT  ++         NVS +
Sbjct: 3   IMEEAKKLIIELFSELAKIHGLN-KSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMS 61

Query: 91  LKKLIDLGFIKHQRSRIDKRSIRISLTQSGK--EIAETISQLYQRHIESIDKV-GGLSVD 147
           LKKL +LGF++    + ++++   ++       +IA+    L  +  E + K+    + +
Sbjct: 62  LKKLEELGFVRKVWIKGERKNYYEAVDGFSSIKDIAKRKHDLIAKTYEDLKKLEEKCNEE 121

Query: 148 DFIAMNKLLQRLNRF 162
           +   + + ++ + R 
Sbjct: 122 EKEFIKQKIKGIERM 136