RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780351|ref|YP_003064764.1| MarR family transcriptional
regulator [Candidatus Liberibacter asiaticus str. psy62]
(171 letters)
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural
genomics, PSI, protein structure initiative; 1.60A
{Enterococcus faecalis} SCOP: a.4.5.28
Length = 144
Score = 64.9 bits (158), Expect = 9e-12
Identities = 28/136 (20%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 27 ECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGS 85
+ LR + + R+L ++ EF+ + Q L L + + + ++ +
Sbjct: 2 DILREIGMIARALDSISNIEFKELS---LTRGQYLYLVRVCENPGIIQEKIAELIKVDRT 58
Query: 86 NVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLS 145
+ +K+L + GFI Q +K+ RI T+ GK + I + Q + + GLS
Sbjct: 59 TAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRENQHSNQVA--LQGLS 116
Query: 146 VDDFIAMNKLLQRLNR 161
+ + L R+ +
Sbjct: 117 EVEISQLADYLVRMRK 132
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium
difficile}
Length = 189
Score = 63.0 bits (153), Expect = 3e-11
Identities = 28/142 (19%), Positives = 61/142 (42%), Gaps = 7/142 (4%)
Query: 29 LRLVERLHRSLLDVTR--DEFERQGRSDVNAVQALLLFNIGDL---ELTAGELRSRGYYL 83
L L+ + + +L +T + + + Q + + +I L E T + +
Sbjct: 11 LFLMNQTYATLFTLTNKIQIEGDKYFGILTSRQYMTILSILHLPEEETTLNNIARKMGTS 70
Query: 84 GSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGG 143
N++ + L G++ S DKR+I + +T GK++ T S+ + +
Sbjct: 71 KQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCSRTGINFMADV--FHE 128
Query: 144 LSVDDFIAMNKLLQRLNRFWGD 165
+ D+ + LL+++ RF G+
Sbjct: 129 FTKDELETLWSLLKKMYRFNGE 150
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor,
winged helix motif, DNA-binding; 1.40A {Methanobacterium
thermoautotrophicum} PDB: 3bpx_A*
Length = 138
Score = 61.1 bits (148), Expect = 1e-10
Identities = 26/133 (19%), Positives = 57/133 (42%), Gaps = 9/133 (6%)
Query: 29 LRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNV 87
L ++ R HR + G ++ Q L I + EL + + +
Sbjct: 7 LSIILRSHRVFIG------RELGHLNLTDAQVACLLRIHREPGIKQDELATFFHVDKGTI 60
Query: 88 SYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVD 147
+ L++L + GFI+ ++ ++R + +T+ G+EI I ++ +R + + + D
Sbjct: 61 ARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLILKVEERWEDLL--FRDFTED 118
Query: 148 DFIAMNKLLQRLN 160
+ K+ +RL
Sbjct: 119 ERKLFRKMCRRLA 131
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription
regulator, activator, DNA-binding, repressor; HET: SAL;
2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Length = 166
Score = 60.3 bits (146), Expect = 2e-10
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 29 LRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE--LTAGELRSRGYYLGSN 86
L + R+ R+L+D R ++ + L NI L + +L +
Sbjct: 31 LARLVRIWRALID------HRLKPLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPS 84
Query: 87 VSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSV 146
+ L +L D G I Q D+R+ RI LT+ + + + ++ + I + G+S
Sbjct: 85 LVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEMEEVIHKTRGEI--LAGISS 142
Query: 147 DDFIAMNKLLQRLNR 161
++ + KL+ +L
Sbjct: 143 EEIELLIKLIAKLEH 157
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural
genomics, MI center for structural genomics, MCSG,
unknown function; 1.78A {Listeria innocua}
Length = 143
Score = 60.1 bits (146), Expect = 3e-10
Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 6/144 (4%)
Query: 19 NDISGLYVECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELR 77
N + G Y E V + + V Q +L I E ++ E+
Sbjct: 2 NAMRGYYDEISFDVNTTAKKMHLFLMRSIASYD---VTPEQWSVLEGIEANEPISQKEIA 58
Query: 78 SRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIES 137
V+ + L+ I + S D+R +SLT G++ + + + E
Sbjct: 59 LWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELRDIVEASCEK 118
Query: 138 IDKVGGLSVDDFIAMNKLLQRLNR 161
+ G++ D +L+ ++
Sbjct: 119 M--FAGVTRTDLEQFTAILKNIST 140
>1jgs_A Multiple antibiotic resistance protein MARR; transcription
regulation, DNA-binding, repressor; HET: SAL; 2.30A
{Escherichia coli} SCOP: a.4.5.28
Length = 138
Score = 59.1 bits (143), Expect = 6e-10
Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 29 LRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNV 87
+ +V + LL+ E D+ A Q +L +I +T EL+ +
Sbjct: 12 IHMVNQKKDRLLN------EYLSPLDITAAQFKVLCSIRCAACITPVELKKVLSVDLGAL 65
Query: 88 SYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVD 147
+ L +L+ G+++ + DKR + + LT G I E QL + + + L+ D
Sbjct: 66 TRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLVGQDLHQ-ELTKNLTAD 124
Query: 148 DFIAMNKLLQRL 159
+ + LL+++
Sbjct: 125 EVATLEYLLKKV 136
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for
structural genomics, PSI, protein structure initiative,
MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Length = 145
Score = 58.8 bits (142), Expect = 6e-10
Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 4/131 (3%)
Query: 33 ERLHRSLLDVTRDEFERQGRS-DVNAVQALLLFNIGDL-ELTAGELRSRGYYLGSNVSYN 90
ER+ R + + + E + R + Q +L I GEL S V+
Sbjct: 8 ERILREICFMVKVEGRKVLRDFGITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGL 67
Query: 91 LKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDDFI 150
+K+L G++ D+R+ + +T+ G+E+ E + + + IE I L +
Sbjct: 68 VKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIERRENFIEKI--TSDLGKEKSS 125
Query: 151 AMNKLLQRLNR 161
+ L+ L
Sbjct: 126 KILDYLKELKG 136
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein
structure initiati structural genomics; HET: MSE; 2.00A
{Acinetobacter SP}
Length = 148
Score = 58.3 bits (141), Expect = 1e-09
Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 9/133 (6%)
Query: 30 RLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNVS 88
L +L +F + + ++ + + ++ + VS
Sbjct: 19 MLANKLMLKSSTAYTQKF------GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVS 72
Query: 89 YNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDD 148
+KKL + +I+ DKR+ I+LT+ G+E+ E S + + + +
Sbjct: 73 RTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQL--LEEFEEAE 130
Query: 149 FIAMNKLLQRLNR 161
+ LL++L
Sbjct: 131 KDQLFILLKKLRN 143
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter
pomeroyi DSS, structural genomics, PSI-2, protein
structure initiative; 2.20A {Silicibacter pomeroyi}
Length = 161
Score = 57.8 bits (139), Expect = 1e-09
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 6/136 (4%)
Query: 31 LVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNVSY 89
L+ R+ + + + LL ++ LT G+L + G S S
Sbjct: 30 LLTRITHIWSSELNQALASEK---LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSR 86
Query: 90 NLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDDF 149
+ +L+D G S D+R + LT+ GK+ IS L + VG + D
Sbjct: 87 TVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPLINDFHAEL--VGNVDPDKL 144
Query: 150 IAMNKLLQRLNRFWGD 165
++L + + D
Sbjct: 145 QTCIEVLGEILKGKTD 160
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.10A {Clostridium acetobutylicum}
Length = 148
Score = 57.7 bits (139), Expect = 1e-09
Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 8/135 (5%)
Query: 30 RLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNI---GDLELTAGELRSRGYYLGSN 86
L+ + L G +N+ Q ++ I + + +L G++
Sbjct: 17 YLIRSIGMKLKTSADARLAELG---LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGAS 73
Query: 87 VSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSV 146
++ L+ L G+I+ + + R I + G + E + ++ ESI GL+
Sbjct: 74 ITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNNIFLEVEESI--TKGLTK 131
Query: 147 DDFIAMNKLLQRLNR 161
D+ + +L ++NR
Sbjct: 132 DEQKQLMSILIKVNR 146
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural
genomics, PSI, protein structure initiative; 2.10A
{Pseudomonas aeruginosa} SCOP: a.4.5.28
Length = 142
Score = 57.0 bits (137), Expect = 2e-09
Identities = 21/135 (15%), Positives = 60/135 (44%), Gaps = 7/135 (5%)
Query: 28 CLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDL-ELTAGELRSRGYYLGSN 86
L L+ + + + R + G + Q ++ + E+ + +L ++ L +
Sbjct: 11 TLTLL-QAREAAMSFFRPSLNQHG---LTEQQWRVIRILRQQGEMESYQLANQACILRPS 66
Query: 87 VSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSV 146
++ L +L G ++ ++ D+R + ++LT+ G++ ++S +++ + I
Sbjct: 67 MTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSGDMEKNYQRI--QERFGE 124
Query: 147 DDFIAMNKLLQRLNR 161
+ + +LL L +
Sbjct: 125 EKLAQLLELLNELKK 139
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance
regulator, virulence determinant, transcriptional
factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Length = 142
Score = 56.1 bits (135), Expect = 4e-09
Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Query: 30 RLVERLHRSLLDVTRDEFER-QGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNV 87
+L L+ + V R + + ++ Q L+L + D + ++ + V
Sbjct: 9 QLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWDESPVNVKKVVTELALDTGTV 68
Query: 88 SYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVD 147
S LK++ + IK +RS +D+R + I LT + I +S + + LS D
Sbjct: 69 SPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSNASDKVASAS----SLSQD 124
Query: 148 DFIAMNKLLQRL 159
+ +N+LL ++
Sbjct: 125 EVKELNRLLGKV 136
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A
{Xanthomonas campestris} PDB: 2pfb_A
Length = 153
Score = 56.1 bits (135), Expect = 4e-09
Identities = 24/133 (18%), Positives = 60/133 (45%), Gaps = 5/133 (3%)
Query: 30 RLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNVS 88
+L L+ + L + + D+ Q L++ + + + + E+ R Y + ++
Sbjct: 20 QLSFALYSANLAMHKLYRGLLKALDLTYPQYLVMLVLWETDERSVSEIGERLYLDSATLT 79
Query: 89 YNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDD 148
LK+L G + R+ D+R + I+LT++G+ + + ++ + S+D+
Sbjct: 80 PLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSKAGAVPEQVFCAS----ACSLDE 135
Query: 149 FIAMNKLLQRLNR 161
+ + L++L
Sbjct: 136 LRQLKQELEKLRS 148
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix
motif, DNA-binding, transcription, transcription
regulation; 2.40A {Staphylococcus aureus}
Length = 139
Score = 55.3 bits (133), Expect = 7e-09
Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 8/134 (5%)
Query: 31 LVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE---LTAGELRSRGYYLGSNV 87
L + + + E+ + Q L + + LT ++ G V
Sbjct: 8 LFRMISHEMKQKADQKLEQFD---ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTV 64
Query: 88 SYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVD 147
S L+ L I D R I LT SG ++ E + ++ +++ V LS +
Sbjct: 65 SNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTL--VSQLSEE 122
Query: 148 DFIAMNKLLQRLNR 161
+ M L ++
Sbjct: 123 ENEQMKANLTKMLS 136
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine
disulfide, MARR-family transcriptional regulator,
DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB:
3hse_A 3hrm_A
Length = 140
Score = 55.3 bits (133), Expect = 7e-09
Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 5/131 (3%)
Query: 30 RLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNVS 88
+L + S ++ + D+ ++L I + E L +L R + ++
Sbjct: 9 QLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLT 68
Query: 89 YNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDD 148
LKKL ++ R D+R+++ISLT+ GK I ++++ + +S +
Sbjct: 69 PLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEISVKVFNEF----NISERE 124
Query: 149 FIAMNKLLQRL 159
+ L+
Sbjct: 125 ASDIINNLRNF 135
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix,
trasnscription regulator, structural genomics, PSI-2;
2.01A {Silicibacter pomeroyi dss-3}
Length = 152
Score = 54.4 bits (130), Expect = 1e-08
Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 6/140 (4%)
Query: 27 ECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGS 85
+ ++ L R++ R+G V Q +L + TA +L +
Sbjct: 13 QAVQATRPLLRNITAAVERGTLREG---VTVGQRAILEGLSLTPGATAPQLGAALQMKRQ 69
Query: 86 NVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLS 145
+S L+++ G I+ + + RS R LT G+ I I + G S
Sbjct: 70 YISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIRADEMAKLALF--SEGFS 127
Query: 146 VDDFIAMNKLLQRLNRFWGD 165
+ A +K+ L RF+ D
Sbjct: 128 SVELTAYHKVQLALTRFFAD 147
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural
genomics, protein structure initiative; HET: GOL; 2.00A
{Rhodococcus jostii RHA1}
Length = 150
Score = 54.2 bits (130), Expect = 2e-08
Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 7/131 (5%)
Query: 31 LVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE--LTAGELRSRGYYLGSNVS 88
L+ R+ +L G + +L + + + + S +
Sbjct: 16 LLSRVGGMVLGAVNKALVPTG---LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIV 72
Query: 89 YNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDD 148
+ +L + G + D+R+ I+ T+ G+ + + G+
Sbjct: 73 GLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAKARVDAAHGRY--FEGIPDTV 130
Query: 149 FIAMNKLLQRL 159
M LQ +
Sbjct: 131 VNQMRDTLQSI 141
>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2,
protein structure initiative; 2.39A {Silicibacter
pomeroyi dss-3}
Length = 160
Score = 53.9 bits (129), Expect = 2e-08
Identities = 26/136 (19%), Positives = 54/136 (39%), Gaps = 9/136 (6%)
Query: 33 ERLHRSLLDVTR---DEFERQ--GRSDVNAVQALLLFNIGDLE--LTAGELRSRGYYLGS 85
RL ++L + + RQ + ++ + + + L+ G+L
Sbjct: 18 TRLWLNILRLHGLVFGDLNRQLLDETGLSLAKFDAMAQLARNPDGLSMGKLSGALKVTNG 77
Query: 86 NVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLS 145
NVS + +LI G + S D+RS LT +G + S+ + R + + + +S
Sbjct: 78 NVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQASEAHNRILAEL--LRAVS 135
Query: 146 VDDFIAMNKLLQRLNR 161
D + + L+ +
Sbjct: 136 DQDMVEASAALRGILE 151
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics; 2.40A {Pseudomonas aeruginosa}
Length = 140
Score = 53.5 bits (128), Expect = 2e-08
Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 7/131 (5%)
Query: 30 RLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDL-ELTAGELRSRGYYLGSNVS 88
++ + ++ F + + Q L +G+ +L + +
Sbjct: 15 FILRQANQRY----AALFANGIGNGLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIK 70
Query: 89 YNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDD 148
+++L G I+ D R + +SL+ +G+ E + + LS+ +
Sbjct: 71 GVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAGLAAAREINRQA--LAPLSLQE 128
Query: 149 FIAMNKLLQRL 159
+ LL RL
Sbjct: 129 QETLRGLLARL 139
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix;
1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A
3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Length = 146
Score = 53.5 bits (128), Expect = 2e-08
Identities = 28/133 (21%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 29 LRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLELTAGELRSRGYYLGSNVS 88
++++ + + ++R+ R G +++ + L+L D T L +R + S ++
Sbjct: 9 IQIMSTIAKIYRAMSRELNRRLGELNLSYLDFLVLRATSDGPKTMAYLANRYFVTQSAIT 68
Query: 89 YNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDD 148
++ KL ++G + R R D+R I I +T+ G E ++Y++ + G LS D+
Sbjct: 69 ASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGIEIYKKLANEV--TGDLSEDE 126
Query: 149 FIAMNKLLQRLNR 161
I + + ++ +
Sbjct: 127 VILVLDKISKILK 139
>3ech_A MEXR, multidrug resistance operon repressor; winged helix,
helix-turn-helix, protein-peptide complex; 1.80A
{Pseudomonas aeruginosa} PDB: 1lnw_A
Length = 142
Score = 52.7 bits (126), Expect = 4e-08
Identities = 21/132 (15%), Positives = 53/132 (40%), Gaps = 4/132 (3%)
Query: 29 LRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNV 87
+ + + + + + E + Q R D+ +L I + L +L + + +
Sbjct: 10 MPALMAVFQHVRTRIQSELDCQ-RLDLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALI 68
Query: 88 SYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVD 147
+ +++L ++ +R+ D+RS ++ LT G I + R + + L+
Sbjct: 69 TRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAELIMSRVHDEL--FAPLTPV 126
Query: 148 DFIAMNKLLQRL 159
+ + LL +
Sbjct: 127 EQATLVHLLDQC 138
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator
family, PSI, protein structure initiative; HET: MSE;
2.25A {Bacillus subtilis} SCOP: a.4.5.28
Length = 155
Score = 52.7 bits (126), Expect = 4e-08
Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 6/139 (4%)
Query: 24 LYVECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYY 82
L + ++ L + + + E+QG V Q +L ++ L E+ R
Sbjct: 7 LMSDIQLSLQALFQKIQPEMLESMEKQG---VTPAQLFVLASLKKHGSLKVSEIAERMEV 63
Query: 83 LGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVG 142
S V+ +L I + D+R I +SLT G E + + + +
Sbjct: 64 KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVLAGRKAIMARY--LS 121
Query: 143 GLSVDDFIAMNKLLQRLNR 161
L+ ++ + + +L +
Sbjct: 122 FLTEEEMLQAAHITAKLAQ 140
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm,
transcription regulation, binding, transcription
regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB:
3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A
Length = 151
Score = 52.1 bits (125), Expect = 6e-08
Identities = 25/135 (18%), Positives = 56/135 (41%), Gaps = 10/135 (7%)
Query: 29 LRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLELTAGELRSRGYYLGSNVS 88
+ V L LL + E+ ++A Q+ +L + LT G++ + + VS
Sbjct: 16 INDVNTLTAKLLKDLQTEY------GISAEQSHVLNMLSIEALTVGQITEKQGVNKAAVS 69
Query: 89 YNLKKLIDLGFIKHQR--SRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSV 146
+KKL++ +K ++ S D+R I L+ GK+ + + +
Sbjct: 70 RRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERKAIMSHIASDM--TSDFDS 127
Query: 147 DDFIAMNKLLQRLNR 161
+ + ++L+ ++
Sbjct: 128 KEIEKVRQVLEIIDY 142
>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Mycobacterium tuberculosis H37RV}
Length = 168
Score = 51.7 bits (123), Expect = 9e-08
Identities = 18/141 (12%), Positives = 49/141 (34%), Gaps = 4/141 (2%)
Query: 29 LRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDL-ELTAGELRSRGYYLGSNV 87
+ R L+ ++ + ++ Q L + + + L + S
Sbjct: 18 TDALLTASRLLVAISAHSIAQVD-ENITIPQFRTLVILSNHGPINLATLATLLGVQPSAT 76
Query: 88 SYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVD 147
+ +L+ I +R + +LT+ G+++ +++ + I I V ++
Sbjct: 77 GRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVTEHRRTEIARI--VEQMAPA 134
Query: 148 DFIAMNKLLQRLNRFWGDQIA 168
+ + + L G+ A
Sbjct: 135 ERHGLVRALTAFTEAGGEPDA 155
>3bdd_A Regulatory protein MARR; ZP_00875883.1, putative multiple
antibiotic-resistance repressor (MARR), structural
genomics; 2.20A {Streptococcus suis 89}
Length = 142
Score = 51.2 bits (122), Expect = 1e-07
Identities = 24/131 (18%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Query: 30 RLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNVS 88
L+ RL + ++ ++ G ++ + +L + L L+ R + V+
Sbjct: 7 DLLYRLKVADETISNLFEKQLG---ISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVT 63
Query: 89 YNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDD 148
+LK L + G+I +R+ ++R + + T+ +E T + + I++ L+V++
Sbjct: 64 RHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNPSAHHQAIKT-SMNQILTVEE 122
Query: 149 FIAMNKLLQRL 159
L +L
Sbjct: 123 SEQFLATLDKL 133
>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR,
MARR family, bacterial transcription factor, DNA binding
protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB:
1z9c_A*
Length = 147
Score = 51.1 bits (122), Expect = 1e-07
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 5/133 (3%)
Query: 30 RLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGD-LELTAGELRSRGYYLGSNVS 88
+L L+ S ++T+ + ++ Q L L + + LT ++ + Y ++
Sbjct: 13 QLSFLLYASSREMTKQYKPLLDKLNITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLT 72
Query: 89 YNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDD 148
LK++ G I +RS D+RS+ ISLT+ G + E + I + S +D
Sbjct: 73 PMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKAVDIPGT----ILGLSKQSGED 128
Query: 149 FIAMNKLLQRLNR 161
+ L L
Sbjct: 129 LKQLKSALYTLLE 141
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1,
putative MARR-like transcription regulator, structural
genomics; 2.38A {Bacillus cereus atcc 10987}
Length = 139
Score = 50.8 bits (121), Expect = 2e-07
Identities = 19/136 (13%), Positives = 58/136 (42%), Gaps = 6/136 (4%)
Query: 27 ECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDL-ELTAGELRSRGYYLGS 85
E + ++ L E+ ++ VQ ++ + +++ +L + S
Sbjct: 6 ELYGNIRDVYHLLQKNLDKAIEQYD---ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPS 62
Query: 86 NVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLS 145
N++ ++++ G++ +++ D+R + LT+ G+E + + Y ++ G +
Sbjct: 63 NMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVDVQYSDFLKEN--CGCFT 120
Query: 146 VDDFIAMNKLLQRLNR 161
++ + LL + +
Sbjct: 121 KEEEGILEDLLLKWKK 136
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics
resistance repressor, XCC structural genomics, X-RAY
diffraction; 1.80A {Xanthomonas campestris}
Length = 162
Score = 50.2 bits (119), Expect = 2e-07
Identities = 24/133 (18%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 30 RLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNVS 88
L R+ ++ V D + + + ++ + +A E+ R VS
Sbjct: 28 VLSNRISGNIAKVYGDRY------GMAIPEWRVITILALYPGSSASEVSDRTAMDKVAVS 81
Query: 89 YNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDD 148
+ +L++ GFI+ + D+R ++L+ +G+++ ET++ L + + + S ++
Sbjct: 82 RAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVAPLVNEMEQRL--MSVFSAEE 139
Query: 149 FIAMNKLLQRLNR 161
+ +L+ RL +
Sbjct: 140 QQTLERLIDRLAK 152
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator,
APC5857, structural genomics, PSI, protein structure
initiative; 1.80A {Pseudomonas aeruginosa} SCOP:
a.4.5.28
Length = 146
Score = 50.0 bits (119), Expect = 2e-07
Identities = 21/134 (15%), Positives = 45/134 (33%), Gaps = 7/134 (5%)
Query: 30 RLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE--LTAGELRSRGYYLGSNV 87
L+ + R+ G ++ + L+L ++ T EL G +
Sbjct: 13 TLLAQTSRAWRAELDRRLSHLG---LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTL 69
Query: 88 SYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVD 147
+ L L G ++ D+R+ I LT + I + + + G+
Sbjct: 70 ARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIEAIAASVRNDV--LTGIDES 127
Query: 148 DFIAMNKLLQRLNR 161
+ ++L R+
Sbjct: 128 EQALCQQVLLRILA 141
>1ku9_A Hypothetical protein MJ223; putative transcription factor,
homodimeric winged-helix fold, structural genomics, PSI;
2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Length = 152
Score = 50.1 bits (119), Expect = 2e-07
Identities = 21/135 (15%), Positives = 60/135 (44%), Gaps = 4/135 (2%)
Query: 31 LVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLELTAGELRSRGYYLGSNVSYN 90
++E + ++++ + + G + + + + D LT ++ NVS +
Sbjct: 3 IMEEAKKLIIELFSELAKIHGLN-KSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMS 61
Query: 91 LKKLIDLGFIKHQRSRIDKRSIRISLTQSGK--EIAETISQLYQRHIESIDKV-GGLSVD 147
LKKL +LGF++ + ++++ ++ +IA+ L + E + K+ + +
Sbjct: 62 LKKLEELGFVRKVWIKGERKNYYEAVDGFSSIKDIAKRKHDLIAKTYEDLKKLEEKCNEE 121
Query: 148 DFIAMNKLLQRLNRF 162
+ + + ++ + R
Sbjct: 122 EKEFIKQKIKGIERM 136
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding
protein, DNA-binding, transcription regulation; 1.90A
{Sulfolobus solfataricus}
Length = 144
Score = 49.7 bits (118), Expect = 3e-07
Identities = 17/137 (12%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 26 VECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLELTAGELRSRGYYLGS 85
++ + + +++R + + + +++ + +L + + L +R + S
Sbjct: 8 LQLMNTIAKIYRGSIKEFNNRLGK--LMNLSYLDFSILKATSEEPRSMVYLANRYFVTQS 65
Query: 86 NVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLS 145
++ + KL G ++ R D+R + + +T G+++ +++ + + + + +
Sbjct: 66 AITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEANEVLRNLVNEM--LSDVE 123
Query: 146 VDDFI--AMNKLLQRLN 160
+ + +NK+L R+
Sbjct: 124 NVEELLEGLNKILSRIG 140
>2fxa_A Protease production regulatory protein HPR; protease porduction,
regulation, structural genomics, PSI, protein structure
initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis}
SCOP: a.4.5.28
Length = 207
Score = 48.9 bits (116), Expect = 5e-07
Identities = 20/109 (18%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 32 VERLHRSLLDVTRDEFERQGRS-DVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNVSY 89
+ +L ++L ++++ + D+N + +L+ L + E+ G S
Sbjct: 22 MAQLSKALWKSIEKDWQQWLKPYDLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFN 81
Query: 90 NLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESI 138
KKL + G+++ + DKR+ + LT+ G E+ ++ + + ++
Sbjct: 82 FSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEEFDPTRNAV 130
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix
DNA binding motif, structural genomics, PSI-2; 2.30A
{Geobacillus stearothermophilus}
Length = 150
Score = 49.0 bits (116), Expect = 6e-07
Identities = 27/132 (20%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 32 VERLHRSLLDVTRDEFERQGRS-DVNAVQALLLFNIGDL-ELTAGELRSRGYYLGSNVSY 89
+E+L R + + + + Q + L + + +LT GEL ++ Y S +
Sbjct: 16 LEKLLRYIAANLKQRGREILTNYPITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTD 75
Query: 90 NLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDDF 149
+ ++ G + R D+R +RI L + G+ I E + + QR + ++ + S ++
Sbjct: 76 LVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVIEKRQRDLANV--LESFSDEEI 133
Query: 150 IAMNKLLQRLNR 161
+ + L++L++
Sbjct: 134 VVFERCLRKLHQ 145
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription
factor, structural genomics, oxford protein production
facility; 2.10A {Neisseria meningitidis serogroup B}
Length = 145
Score = 46.6 bits (110), Expect = 3e-06
Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 3/134 (2%)
Query: 29 LRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNV 87
+ +++L + + + G+ D+N +L+ + T + + V
Sbjct: 3 MNQLDQLGTRINLICNVFDKWIGQQDLNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTV 62
Query: 88 SYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVD 147
S K L G I+ Q D+R +SLT++GK A +++ Q + +
Sbjct: 63 SGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLTESAQEFSDKV--FATFGDK 120
Query: 148 DFIAMNKLLQRLNR 161
+ L L
Sbjct: 121 RTTRLFADLDALAE 134
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix
protein, transcription; 2.20A {Staphylococcus aureus}
SCOP: a.4.5.28 a.4.5.28
Length = 250
Score = 45.7 bits (108), Expect = 6e-06
Identities = 19/107 (17%), Positives = 45/107 (42%)
Query: 34 RLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKK 93
+ + + + + LF+ + L ++ S Y S++ ++K
Sbjct: 14 IIEAYMFRFKKKVKPEVDMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKV 73
Query: 94 LIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDK 140
L+ +I RS+ID+R+ IS+++ +E L+ + I+ +
Sbjct: 74 LVKHSYISKVRSKIDERNTYISISEEQREKIAERVTLFDQIIKQFNL 120
Score = 41.8 bits (98), Expect = 7e-05
Identities = 13/70 (18%), Positives = 28/70 (40%)
Query: 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQ 129
+ +L ++ L L G++ +RS D+R I I + + ++ AE +
Sbjct: 174 IVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQLLA 233
Query: 130 LYQRHIESID 139
+ + D
Sbjct: 234 QVNQLLADKD 243
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple
antibiotic-resistance repressor (MARR), structural
genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Length = 154
Score = 37.5 bits (86), Expect = 0.002
Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 6/139 (4%)
Query: 27 ECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGS 85
E L+ + R G + Q ++ I ++ +L R GS
Sbjct: 14 ELLKTYWSIQRISAGYADQNAASLG---LTIQQLAMINVIYSTPGISVADLTKRLIITGS 70
Query: 86 NVSYNLKKLIDLGFIKHQR--SRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGG 143
+ + N+ LI LG + D + + L++ G+++++ + + +
Sbjct: 71 SAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTANAFMYKAMMKVFEN 130
Query: 144 LSVDDFIAMNKLLQRLNRF 162
L+ ++ + +L +++
Sbjct: 131 LTENEIEELIRLNKKVETL 149
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein,
divalent metal binding, transcription; 2.50A
{Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A
1fzp_D
Length = 127
Score = 36.2 bits (83), Expect = 0.004
Identities = 16/121 (13%), Positives = 42/121 (34%), Gaps = 14/121 (11%)
Query: 19 NDISGLYVECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE---LTAGE 75
ND L + ++L + ++ + +L I + + +
Sbjct: 10 NDCFELLS-MVTYADKLKSLIKK----------EFSISFEEFAVLTYISENKEKEYYLKD 58
Query: 76 LRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHI 135
+ + Y V +K L + +R+ D+R++ I + ++ E++ + I
Sbjct: 59 IINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRI 118
Query: 136 E 136
Sbjct: 119 T 119
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein
structure initiative; 2.20A {Thermoplasma acidophilum
dsm 1728} SCOP: a.4.5.28 b.43.5.2
Length = 230
Score = 36.1 bits (83), Expect = 0.004
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQ 129
LT+ +L + S + L G+I KR +++T+ G ++ T
Sbjct: 27 YLTSSKLADMLGISQQSASRIIIDLEKNGYITRTV---TKRGQILNITEKGLDVLYTEFA 83
Query: 130 LYQR 133
R
Sbjct: 84 DLSR 87
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator
protein R and maltose...; novel fold for DNA binding;
HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28
c.94.1.1
Length = 487
Score = 34.9 bits (79), Expect = 0.010
Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 6 QSKIISDTDSAIGNDISGLYVECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFN 65
Q+ ++ S I NDI+ L + V++ R + ++N + +L +
Sbjct: 365 QTNAAAEFMSKI-NDINDLVNATFQ-VKKFFRDTKK----------KFNLNYEEIYILNH 412
Query: 66 I---GDLELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKE 122
I E+++ E+ + ++ L+KL DL + +RS D+R++ + +T + K
Sbjct: 413 ILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKA 472
Query: 123 -IAETISQL 130
I + IS+L
Sbjct: 473 NIQKLISEL 481
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 34.1 bits (78), Expect = 0.016
Identities = 33/193 (17%), Positives = 58/193 (30%), Gaps = 65/193 (33%)
Query: 26 VECLRLV-ERLHRSLLDVTRDEFER--QGRSDVNAVQ------ALLL--FNIG------- 67
+E + LV + +++F + ++ A A L+ F +G
Sbjct: 16 LEHVLLVPTASF-FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF-LGYVSSLVE 73
Query: 68 ---------DLELTAGELRSRGYYLGSN----VSYNLKKLIDLGFIKHQ---------RS 105
L L E + YL N ++ L + D +K + R
Sbjct: 74 PSKVGQFDQVLNLCLTEFENC--YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARI 131
Query: 106 RIDKRSIRISLTQSG--KEIAETISQLY-----QRHIESIDKVGGLS---------VDDF 149
+ + S S + + E +QL Q + + D L V D
Sbjct: 132 MAKRPFDKKS--NSALFRAVGEGNAQLVAIFGGQGNTD--DYFEELRDLYQTYHVLVGDL 187
Query: 150 IA-MNKLLQRLNR 161
I + L L R
Sbjct: 188 IKFSAETLSELIR 200
Score = 33.4 bits (76), Expect = 0.025
Identities = 46/257 (17%), Positives = 77/257 (29%), Gaps = 119/257 (46%)
Query: 6 QSKIISDTDSAI----GNDISGLYVECLR--------LVERLHRS----LLDVTRDEFER 49
++++ AI GN Y E LR LV L + L ++ R +
Sbjct: 153 NAQLV-----AIFGGQGN-TDD-YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 50 -----QGRSDVNA----------VQALL-------LFNIGDLEL------------TAGE 75
QG ++ LL L IG ++L T GE
Sbjct: 206 EKVFTQGL-NILEWLENPSNTPDKDYLLSIPISCPL--IGVIQLAHYVVTAKLLGFTPGE 262
Query: 76 LRSR-----GYYLG-----------SNVSY--NLKKLIDL----GFIKHQ---RSRIDKR 110
LRS G+ G S S+ +++K I + G ++ +
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT----- 317
Query: 111 SIRISLTQSGKEIAE------------TISQLYQRHIESIDKVGGLSVDDFIAM---N-- 153
S+ S+ + E E T Q+ Q ++ + L + + N
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQV-QDYVNKTNSH--LPAGKQVEISLVNGA 374
Query: 154 ---------KLLQRLNR 161
+ L LN
Sbjct: 375 KNLVVSGPPQSLYGLNL 391
>2vtv_A PHB depolymerase PHAZ7; hydrolase; 1.9A {Paucimonas lemoignei}
Length = 342
Score = 33.1 bits (75), Expect = 0.036
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 50 QGRSDVNAVQALLLFNIGDL-ELTAGELRSRGYYLGSNVS-YNLKKLIDLGFIKHQRSRI 107
D A A N+ + AG ++ Y ++ YN + H R++
Sbjct: 252 WAGCDSAAKFASTTSNVKAQINVGAGSNATQADYDWADGMPYNAGGGDTTNGVGHFRTKT 311
Query: 108 DKRSI 112
+ +I
Sbjct: 312 NTGAI 316
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix
prnai nucleotide-binding domain; HET: MSE; 1.80A
{Sulfolobus solfataricus}
Length = 244
Score = 32.3 bits (73), Expect = 0.052
Identities = 6/64 (9%), Positives = 18/64 (28%), Gaps = 5/64 (7%)
Query: 71 LTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQL 130
EL + + +L G + + ++ L + G + + +
Sbjct: 167 TGITELAKMLDKSEKTLINKIAELKKFGILTQ-----KGKDRKVELNELGLNVIKLNKSV 221
Query: 131 YQRH 134
+
Sbjct: 222 IESS 225
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding
protein, metalloregulatory protein; 1.61A {Bacillus
subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A
2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A*
2hyg_D
Length = 142
Score = 32.2 bits (73), Expect = 0.070
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 85 SNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGL 144
S+V+ ++KL ++ +++ R + LT GK+I + + RH + +
Sbjct: 37 SSVTKMVQKLDKDEYLIYEKYR------GLVLTSKGKKIGKRL---VYRHELLEQFLRII 87
Query: 145 SVDDFIA 151
VD+
Sbjct: 88 GVDEEKI 94
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose
reductase, plasmid, oxidoreductase, structural genomics,
NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A
3cq3_A*
Length = 103
Score = 30.9 bits (70), Expect = 0.15
Identities = 9/54 (16%), Positives = 27/54 (50%)
Query: 94 LIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVD 147
+++LG I + +R++LT G + +++ + ++ + + V + V+
Sbjct: 27 VVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVE 80
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional
repressor, solution structure, structural genomics; NMR
{Mycobacterium tuberculosis H37RV}
Length = 118
Score = 29.9 bits (67), Expect = 0.33
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQ 129
G+L + SNVS +L L G + + + R +R +L +A + +
Sbjct: 34 VCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVV---ATYEGRQVRYALA--DSHLARALGE 88
Query: 130 LYQ 132
L Q
Sbjct: 89 LVQ 91
>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc,
LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA
binding protein; 1.90A {Staphylococcus aureus} SCOP:
a.4.5.5 PDB: 3f72_A
Length = 122
Score = 29.8 bits (67), Expect = 0.33
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQ 129
EL ++ + +N S++L+ L G + R + + SL E I Q
Sbjct: 56 ELCVCDIANILGVTIANASHHLRTLYKQGVVN---FRKEGKLALYSLGD------EHIRQ 106
Query: 130 LYQRHIESIDKV 141
+ + +V
Sbjct: 107 IMMIALAHKKEV 118
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription;
2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Length = 214
Score = 29.3 bits (65), Expect = 0.41
Identities = 8/64 (12%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 85 SNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGL 144
V+ +KKL+ + + LT G ++ + + ++ + G
Sbjct: 35 PAVTEMMKKLLAEELLIKDKKA------GYLLTDLGLKLVSDLYRKHRLIEVFLVHHLGY 88
Query: 145 SVDD 148
+ ++
Sbjct: 89 TTEE 92
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family);
NESG, DNA-binding, transcription regulation, WHTH,
homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Length = 108
Score = 29.4 bits (66), Expect = 0.42
Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSG-KEIAETIS 128
E + + + S NL+ L G ++ +R + + + +
Sbjct: 38 ERAVEAIATATGMNLTTASANLQALKSGGLVE---ARREGTRQYYRIAGEDVARLFALVQ 94
Query: 129 QLYQRHIE 136
+ H+E
Sbjct: 95 VVADEHLE 102
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional
regulation, winged HTH protein, transcription repressor;
2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A
2kjb_A 2kjc_A
Length = 106
Score = 29.4 bits (66), Expect = 0.43
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQ 129
E + G + + SNVS+ LK L + +K ++ +S+ SL +A + Q
Sbjct: 39 EASVGHISHQLNLSQSNVSHQLKLLKSVHLVK---AKRQGQSMIYSL--DDIHVATMLKQ 93
Query: 130 LYQR 133
Sbjct: 94 AIHH 97
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator,
signaling protein; 2.00A {Mycobacterium tuberculosis}
SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Length = 230
Score = 28.8 bits (64), Expect = 0.65
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 85 SNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRH 134
VS + ++ G ++ R + LT+ G+ +A + ++H
Sbjct: 39 PTVSQTVSRMERDGLLRVAGDR------HLELTEKGRALAI---AVMRKH 79
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 28.3 bits (63), Expect = 0.87
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 99 FIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDDFIAMNKLLQR 158
F + +D + ++ +LT G + Q + G ++ DD+IA L+
Sbjct: 81 FDSDRSGTVDPQELQKALTTMGFRLNP---QTVNSIAKRYSTSGKITFDDYIACCVKLRA 137
Query: 159 LNR 161
L
Sbjct: 138 LTD 140
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 28.1 bits (62), Expect = 0.92
Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 17/72 (23%)
Query: 90 NLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDDF 149
+ K + K SL +G + +S + F
Sbjct: 190 KYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDDLNN-----------------ISFEQF 232
Query: 150 IAMNKLLQRLNR 161
+++ + N+
Sbjct: 233 LSLFNSYKLFNK 244
>1yyv_A Putative transcriptional regulator; reductive methylation, dimethyl
lysine, structural genomics, PSI, protein structure
initiative; HET: MLY; 2.35A {Salmonella typhimurium LT2}
SCOP: a.4.5.69
Length = 131
Score = 28.1 bits (62), Expect = 0.99
Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 61 LLLFNIGDLELTAGELRSRGYYLGSNVSYN-LKKLIDLGFIKHQRSRIDKRSIRISLTQS 119
L+L + D +LR + + L+ L GF+ + + SLT
Sbjct: 39 LILVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPL 98
Query: 120 GKEIAETISQLYQ---RHIESIDK 140
G+++++ ++ L ++ +
Sbjct: 99 GEQVSDXVAALADWIELNLPQVLA 122
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle protein; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A
2ekw_A 2oy6_A* 3i5g_A 3i5f_A ...
Length = 837
Score = 28.1 bits (62), Expect = 1.1
Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 16/93 (17%)
Query: 86 NVSYNLKKLI-----DLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDK 140
+++ KK GF + I + + + + +K
Sbjct: 25 TAAFDGKKNCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEK 84
Query: 141 VGGLSVDDFIAMNKL-----LQRL-NRFWGDQI 167
++D M L L L +R+ I
Sbjct: 85 -----LEDMANMTYLNEASVLYNLRSRYTSGLI 112
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable
transcriptional repressor ARSR family, structural
genomics, PSI-2; 1.48A {Rhodococcus SP}
Length = 151
Score = 28.0 bits (62), Expect = 1.2
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSG-KEIAETIS 128
E T L + S +S +L+ L + G + R D R L G ++
Sbjct: 71 EQTVNNLAAHFPASRSAISQHLRVLTEAGLV---TPRKDGRFRYYRLDPQGLAQLRALFD 127
Query: 129 QLYQRHIESID 139
+ ++ +
Sbjct: 128 SFWIDELDRLV 138
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics,
DNA binding protein; 2.50A {Pyrococcus horikoshii OT3}
SCOP: a.4.5.58 PDB: 2cwe_A
Length = 192
Score = 27.7 bits (61), Expect = 1.5
Identities = 13/105 (12%), Positives = 40/105 (38%), Gaps = 13/105 (12%)
Query: 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRS-----------RIDKRSIRISLTQ 118
E+T +L + ++++KL + G ++ +R+ I+L
Sbjct: 33 EMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADVFYINLYL 92
Query: 119 SGKEIAETISQLYQRHIESIDKVGGLSVDDFIAMNKLLQRLNRFW 163
+E+ + I+ ++G ++ + ++ R+++
Sbjct: 93 GDEELRYIARSRLKTKIDIFKRLGYQFEEN--ELLNIMDRMSQKE 135
>1br2_A Myosin; muscle protein; HET: ADP; 2.90A {Gallus gallus} SCOP:
b.34.3.1 c.37.1.9 PDB: 1br1_A* 1br4_A*
Length = 791
Score = 27.4 bits (60), Expect = 1.6
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 16/93 (17%)
Query: 86 NVSYNLKKLI-----DLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDK 140
++ KKL+ GF + + L ++GK++ + + + + K
Sbjct: 25 QADWSAKKLVWVPSEKHGFEAASIKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFSK 84
Query: 141 VGGLSVDDFIAMNKL-----LQRL-NRFWGDQI 167
V+D + L L L R++ I
Sbjct: 85 -----VEDMAELTCLNEASVLHNLRERYFSGLI 112
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus,
winged helix, fusellovirus, viral protein; 2.70A
{Sulfolobus virus 1} SCOP: a.4.5.48
Length = 99
Score = 27.3 bits (60), Expect = 1.7
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 11/53 (20%)
Query: 89 YNLKK-LIDLGFIKHQRSRIDKRSIRISLTQSGKEIA-------ETISQLYQR 133
Y+ KK LI GF+K ++ R +K R+ LT+ GK A ET Q+ +R
Sbjct: 44 YDAKKFLIQEGFVKERQERGEK---RLYLTEKGKLFAISLKTAIETYKQIKKR 93
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle,
cell division, DNA damage, DNA recombination, DNA
repair, DNA replication; HET: AMP; 1.8A {Pyrococcus
furiosus}
Length = 561
Score = 27.2 bits (59), Expect = 1.9
Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 103 QRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDD-FIAMNKLLQRLNR 161
+ ID + I S+ +G ++ E+I+ ++ + L++ + + K+ +
Sbjct: 71 MATGIDAKEIEESVKDTG-DLGESIALAVKKKKQKSFFSQPLTIKRVYQTLVKVAETTGE 129
Query: 162 FWGDQIAYRL 171
D+ L
Sbjct: 130 GSQDKKVKYL 139
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation,
winged HTH protein, DNA binding, transcription
repressor; 1.70A {Synechococcus elongatus pcc 7942}
SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Length = 122
Score = 27.1 bits (60), Expect = 2.2
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQ 129
EL G+L S VS+ L+ L +L + R R + L I
Sbjct: 59 ELCVGDLAQAIGVSESAVSHQLRSLRNLRLVS---YRKQGRHVYYQLQD------HHIVA 109
Query: 130 LYQRHIESID 139
LYQ ++ +
Sbjct: 110 LYQNALDHLQ 119
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein,
alpha-beta, beta-barrel, structural genomics, PSI,
protein structure initiative; 2.08A {Bacillus subtilis}
Length = 365
Score = 26.8 bits (58), Expect = 2.4
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 11/62 (17%)
Query: 74 GELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQL--Y 131
G++ + S L K + L I + S I + + K + + + Y
Sbjct: 313 GKVTTGTQ------SPTLGKNVGLALIDSETSEIGT---VVDVEIRKKLVKAKVVKTPFY 363
Query: 132 QR 133
+R
Sbjct: 364 KR 365
>1ig8_A Hexokinase PII, hexokinase B; mixed alpha beta, two domains, cleft,
transferase; 2.20A {Saccharomyces cerevisiae} SCOP:
c.55.1.3 c.55.1.3 PDB: 3b8a_X*
Length = 486
Score = 26.9 bits (59), Expect = 2.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 75 ELRSRGYYLGSNVSYNLKKLIDLGFIKHQR--SRIDK 109
E S GYYLG + L + GFI + S+ DK
Sbjct: 302 EKMSSGYYLGEILRLALMDMYKQGFIFKNQDLSKFDK 338
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial
antibiotic resistance, MECI protein, transcriptional
regulatory element; 2.4A {Staphylococcus aureus} SCOP:
a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Length = 123
Score = 26.8 bits (59), Expect = 2.7
Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 20/104 (19%)
Query: 70 ELTAGELRSRGYYLGSNVSYN-----LKKLIDLGFIKHQRS----------RIDKRSIRI 114
+A + + + S + +L GFI ++ +
Sbjct: 24 YASANNIIEE-IQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKT 82
Query: 115 SLTQSGKEIAETISQLYQRHIESIDKVGGLSVDDFIAMNKLLQR 158
S K + L +E LS D+ + +L +
Sbjct: 83 SKNFINKVYKGGFNSLVLNFVEKE----DLSQDEIEELRNILNK 122
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assembly
S-adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding; HET: AMP; 1.60A {Methanocaldococcus
jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 26.5 bits (58), Expect = 2.8
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 20/85 (23%)
Query: 89 YNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGG----- 143
+ F R +S+R +L S KE+ ++ + + ++
Sbjct: 213 NFFDDFLRAIF--QHR-N---KSVRKALIDSSKELNYNKDEMKKILEDFLNTNSEIKNLI 266
Query: 144 ------LSVDDFIAMNKLLQRLNRF 162
LSV D + L RF
Sbjct: 267 NEKVFKLSVKDIV---NLSNEFYRF 288
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding
protein, HTH-type transcription regulators, structural
genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis}
SCOP: a.4.5.69
Length = 107
Score = 26.1 bits (57), Expect = 4.0
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 87 VSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQ---RHIESID 139
++ L++L G I + L++ G+ + + L HI ++
Sbjct: 45 LTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGILDMLXAWGANHINRVE 100
>2p5z_X Type VI secretion system component; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.60A
{Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1
Length = 491
Score = 26.3 bits (57), Expect = 4.3
Identities = 9/61 (14%), Positives = 27/61 (44%)
Query: 90 NLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDDF 149
+L+ L+++ F H ++ R ++ + E E +S ++ I+ ++ +
Sbjct: 2 SLEALMNVQFFDHAHHKLKIRGLQSPVDVLTFEGREQLSTPFRYDIQFTSSDKAIAPESV 61
Query: 150 I 150
+
Sbjct: 62 L 62
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix,
winged-helix-turn- HEIX, structural genomics, PSI; HET:
MSE; 2.16A {Porphyromonas gingivalis W83} SCOP: a.4.5.69
Length = 107
Score = 26.1 bits (57), Expect = 4.8
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 61 LLLFNIGDLELTAGELRSRGYYLGSN-VSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQS 119
L++F I + GEL+ + + LK L G IK ++ + SLT
Sbjct: 29 LIIFQINRRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPL 88
Query: 120 GKEIAETISQLYQ 132
G+++ I ++ +
Sbjct: 89 GEKVLPIIDEIAK 101
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration;
HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP:
a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A*
3e5q_A 2h6b_A* 2h6c_A
Length = 250
Score = 25.7 bits (55), Expect = 5.0
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 8/67 (11%)
Query: 82 YLGS---NVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESI 138
G VS L L + K I + K ++E S + S+
Sbjct: 186 ITGVHHVTVSRVLASLKRENIL-----DKKKNKIIVYNLGELKHLSEQTSYYSDPNSSSV 240
Query: 139 DKVGGLS 145
DK+
Sbjct: 241 DKLAAAL 247
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural
genomics, PSI-2, protein structure initiative; 2.70A
{Enterococcus faecalis V583}
Length = 116
Score = 25.6 bits (56), Expect = 5.6
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 75 ELRSRGYYLGSNVS--YNLKKLIDLGFIKHQRSRIDKRSIRI--SLTQSGKEIAETISQL 130
L +G+ + L +L ++ ++ +K +R LT SG+ Q
Sbjct: 35 ILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADFWQR 94
Query: 131 YQRHIESIDKV---GGLSVDDF 149
+ + ++K+ GG+ F
Sbjct: 95 WTLLSKQVNKMKKNGGIEHVKF 116
>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural
genomics, JCSG, PSI, protein structure initiative; 2.80A
{Thermotoga maritima} SCOP: a.191.1.1
Length = 214
Score = 25.6 bits (56), Expect = 5.8
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 17/78 (21%)
Query: 66 IGDLELTAGELRS--RGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEI 123
D A + + + NV NLK++ D F K+ ++ E
Sbjct: 147 ASDTLNAADLCHAVFQVEKV--NVLINLKEISDETFRKNMLEELE-------------EQ 191
Query: 124 AETISQLYQRHIESIDKV 141
I YQR + ++ +
Sbjct: 192 EAQIEGCYQRVKKMLEGI 209
>1xma_A Predicted transcriptional regulator; southeast collaboratory for
structural genomics, secsg, protein structure
initiative, PSI; 2.30A {Clostridium thermocellum} SCOP:
a.4.5.61
Length = 145
Score = 25.3 bits (55), Expect = 8.1
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 91 LKKLIDLGFIKHQRSRIDKRSIRI--SLTQSGKEIAETISQLYQRHIESIDKV 141
+L G+IK + R +T G + + + ++ + I+K
Sbjct: 83 FARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCEEWELTKKVINKF 135
>3d9w_A Putative acetyltransferase; arylamine N-acetyltransferase, NAT,
X-RAY diffraction, acyltransferase; 2.70A {Nocardia
farcinica}
Length = 293
Score = 25.0 bits (54), Expect = 8.4
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 113 RISLTQSGKEIAETISQLYQRHIESI 138
RI T+ +L RH +I
Sbjct: 24 RIGFAGERAPTLATLRELVYRHTTAI 49
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR,
structural genomics, PSI, protein structure initiative;
2.20A {Enterococcus faecalis V583} SCOP: a.4.5.69
Length = 112
Score = 25.0 bits (54), Expect = 8.6
Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 4/85 (4%)
Query: 61 LLLFNIGDLELTAGELRSRGYYLGSN-VSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQS 119
L+ + GEL + ++ L+++ G + + + +LT
Sbjct: 26 SLMDELFQGTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPE 85
Query: 120 GKEIAETISQLYQ---RHIESIDKV 141
G + + +S L + ++
Sbjct: 86 GYALYDALSSLCHWGETFAQKKARL 110
>1w4t_A Arylamine N-acetyltransferase; 5- aminosalicylic acid, NAT,
xenobiotic metabolism, acyltransferase; 1.95A
{Pseudomonas aeruginosa} SCOP: d.3.1.5
Length = 299
Score = 25.0 bits (54), Expect = 8.8
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 113 RISLTQSGKEIAETISQLYQRHIESI 138
I + G + +L H+ +
Sbjct: 35 HIGIDDPGPPSLANLDRLIDAHLRRV 60
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A
{Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A*
1gx3_A
Length = 278
Score = 24.9 bits (54), Expect = 8.9
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 113 RISLTQSGKEIAETISQLYQRHIESI 138
RI L + T+ + H SI
Sbjct: 14 RIGLDGRPRPDLGTLHAIVAAHNRSI 39
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.138 0.382
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,379,626
Number of extensions: 59404
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 110
Length of query: 171
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 85
Effective length of database: 3,608,246
Effective search space: 306700910
Effective search space used: 306700910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)