BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780351|ref|YP_003064764.1| MarR family transcriptional
regulator [Candidatus Liberibacter asiaticus str. psy62]
         (171 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780351|ref|YP_003064764.1| MarR family transcriptional regulator [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 171

 Score =  341 bits (874), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MNNNIQSKIISDTDSAIGNDISGLYVECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQA 60
           MNNNIQSKIISDTDSAIGNDISGLYVECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQA
Sbjct: 1   MNNNIQSKIISDTDSAIGNDISGLYVECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQA 60

Query: 61  LLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSG 120
           LLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSG
Sbjct: 61  LLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSG 120

Query: 121 KEIAETISQLYQRHIESIDKVGGLSVDDFIAMNKLLQRLNRFWGDQIAYRL 171
           KEIAETISQLYQRHIESIDKVGGLSVDDFIAMNKLLQRLNRFWGDQIAYRL
Sbjct: 121 KEIAETISQLYQRHIESIDKVGGLSVDDFIAMNKLLQRLNRFWGDQIAYRL 171


>gi|254780410|ref|YP_003064823.1| hypothetical protein CLIBASIA_01475 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 362

 Score = 26.6 bits (57), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 62  LLFNIGDLELTAGELRSRGYYLGS 85
           L+FNIGD E+ +  L    Y+LG+
Sbjct: 187 LVFNIGDHEIKSNFLTCSDYFLGA 210


>gi|254780687|ref|YP_003065100.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 318

 Score = 23.1 bits (48), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 125 ETISQLYQRHIESIDK 140
           ETI QLY R + +++K
Sbjct: 117 ETIPQLYNRSLSTVEK 132


>gi|254781039|ref|YP_003065452.1| putative glycerol-3-phosphate dehydrogenase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 329

 Score = 22.3 bits (46), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)

Query: 51  GRSDVNAVQALLLFNIGDLELTAGELRSRGYYLG 84
           GR+D      L L  +GDL LTA   +SR +  G
Sbjct: 232 GRADT----ILRLSGVGDLILTATSEQSRNFCFG 261


>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 762

 Score = 21.9 bits (45), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 4/37 (10%)

Query: 107 IDKRSIRISLTQSGKEIAETISQLY----QRHIESID 139
           +D R   +++TQ  + I E I+Q+Y    +++I++I 
Sbjct: 500 LDIRYPIVAVTQKSRHILEGIAQVYAATDEKYIKTIP 536


>gi|254780239|ref|YP_003064652.1| 30S ribosomal protein S13 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 122

 Score = 21.9 bits (45), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 83  LGSNVSYNLKKLIDLGFIKHQRSR 106
           L   V+ N+K+L+DLG  +  R R
Sbjct: 70  LRRTVAMNIKRLMDLGCYRGLRHR 93


>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 504

 Score = 21.6 bits (44), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 113 RISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDDFIAMNKLLQR 158
           R  LT+   E     SQ+ Q+    ID+ GG+S+       + L+R
Sbjct: 295 RGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKR 340


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.138    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,194
Number of Sequences: 1233
Number of extensions: 3790
Number of successful extensions: 19
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 12
length of query: 171
length of database: 328,796
effective HSP length: 68
effective length of query: 103
effective length of database: 244,952
effective search space: 25230056
effective search space used: 25230056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 35 (18.1 bits)