HHsearch alignment for GI: 254780353 and conserved domain: PRK05560
>PRK05560 DNA gyrase subunit A; Validated.
Probab=100.00 E-value=0 Score=2030.24 Aligned_cols=730 Identities=39% Similarity=0.639 Sum_probs=699.9
Q ss_pred CCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHH
Q ss_conf 42456653199999988888889998510476411289704689999999868999898035405366654276887478
Q gi|254780353|r 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92 (753)
Q Consensus 13 ~~~~i~~~~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~ 92 (753)
T Consensus 5 ~~~~i~~~~~~~~~~~~yl~Ya~svi~~RAlPdvrDGlKPv~RRily~M~~l~l~~~~~~~K~ArivG~v~gkyHPHGd~ 84 (822)
T PRK05560 5 LADRIIPVNIEEEMKRSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDKPYKKSARIVGDVMGKYHPHGDS 84 (822)
T ss_pred HHCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCH
T ss_conf 33444453489999988998889999851288644688508999999998728999999744206641005477898821
Q ss_pred HHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 99999996100132166132678870886779710024689985599999984218786175216799632422312345
Q gi|254780353|r 93 SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172 (753)
Q Consensus 93 s~y~a~v~maq~~~~~~pli~g~GnfGs~~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~ 172 (753)
T Consensus 85 siY~alvrmaQ~~~~r~plidg~GNfGsidgd~~AAmRYTE~rl~~~~~~ll~di~~~tV~f~~NfD~s~~EP~vLPa~~ 164 (822)
T PRK05560 85 AVYDALVRMAQDFSLRYPLVDGQGNFGSIDGDPAAAMRYTEARLAKIAHELLRDIDKETVDFVPNYDGSEQEPTVLPARF 164 (822)
T ss_pred HHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 79999999700223047327157888899998006666788887999999985113065255048898765865256566
Q ss_pred CHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 26764266504677775167778899999999987286532013443203677887760106988999898503341599
Q gi|254780353|r 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 (753)
Q Consensus 173 P~lL~Ng~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i~~ 252 (753)
T Consensus 165 PnlLvNGs~GIAVGmATniPpHNL~Evi~a~~~~i~np~~t~~~L~~~i~GPDFPTGG~I~-~~~~i~~~y~tGrG~i~i 243 (822)
T PRK05560 165 PNLLVNGSSGIAVGMATNIPPHNLGEVIDACLALIDNPDITIEELMEIIPGPDFPTGGIIL-GRSGIREAYRTGRGSIIM 243 (822)
T ss_pred CHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCEEEE-CCHHHHHHHHHCCCEEEE
T ss_conf 4532057751002110588996889999999986359999999994669899799982897-848799999837670999
Q ss_pred EEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 99999864378840799952420021689999999986402221345776406766058898504545889999987542
Q gi|254780353|r 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332 (753)
Q Consensus 253 r~k~~~e~~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeSd~~~~~vi~~~~r~~~~~~vl~~Lyk~ 332 (753)
T Consensus 244 R~k~~iE~~~~~r~~IvItEIPY~vnk~~liekIa~lv~~kki~gI~dirDESdr~GiRIVIelKr~~~~~~vln~Lyk~ 323 (822)
T PRK05560 244 RAKAEIEEIRKGREAIIVTEIPYQVNKARLIEKIAELVKEKKIEGISDIRDESDRDGMRIVIELKRDAVPEVVLNNLYKH 323 (822)
T ss_pred EEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 88999998579953899996898577999999999998557544510300356877627999967989979999999860
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 00001223311333126897220499999989999899999999999999999999999999864107899997520000
Q gi|254780353|r 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412 (753)
Q Consensus 333 T~Lq~sf~~N~~~l~~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~iIR~s~~ 412 (753)
T Consensus 324 T~Lq~sf~~N~~al~~g-~P~~l~Lk~~L~~fi~hR~~vi~rr~~~~L~ka~~RlhIleGl~~a~~~iDeVI~iIR~S~~ 402 (822)
T PRK05560 324 TQLQTSFGINMLALVDG-QPKLLNLKQILEAFVDHRKEVITRRTRFELRKARERAHILEGLLIALDNIDEVIALIRASPT 402 (822)
T ss_pred CCHHHCCCCEEEEEECC-EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCC
T ss_conf 84132036117998799-87786499999999999999999999999999998899998899999587999999971898
Q ss_pred ---CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf ---11000000257757788998878999988999976667899998877654420397887899999999998741774
Q gi|254780353|r 413 ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 (753)
Q Consensus 413 ---~k~~L~~~f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~ 489 (753)
T Consensus 403 ~~~Ak~~L~~~f~lse~QA~AIL~mrL~rLt~Le~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd~ 482 (822)
T PRK05560 403 PAEAREGLMERYGLSEIQAQAILDMRLQRLTGLEREKIEDEYKELLAEIADLLDILASPERLMEIIREELEEIKEKFGDP 482 (822)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 78999989887588999999999989999876789999999999999999999886599999999999999999982998
Q ss_pred CCCCCCCCCEEECCCHHHHHHHHCCCCCCCCEEEEECCCEEECC--------CCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 33455542000011000000110024566705998710102025--------6554455322345555540121111478
Q gi|254780353|r 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTD 561 (753)
Q Consensus 490 ~~~~~RRT~iie~~~~~~~~~~EdlI~~E~v~V~LS~~GyIKr~--------k~~~~~~~~~~~KegD~l~~~~~~~t~d 561 (753)
T Consensus 483 -----RRT~I~~~~---~ei~~EDLI~~E~vvVtlS~~GYIKR~~~~~yr~Q~RGGkG~~g~~~ke~D~v~~~~~~~Thd 554 (822)
T PRK05560 483 -----RRTEIEAGE---GDIDDEDLIANEDVVVTLTHGGYIKRVPLDEYRAQRRGGKGKSGAGTKEDDFVEHLFVANTHD 554 (822)
T ss_pred -----CCEEEECCC---CCCCHHHCCCCCCEEEEEECCCEEEEECHHHHHHHCCCCCCCCCCCCCCCCHHHHEEEECCCC
T ss_conf -----860441565---656254417776469999468268861326655312677774343045565344326824788
Q ss_pred CEEEEECCCEEEEEEHHHCCCC--CCCCCCCCCCCCCCCCCEEEEEEEE---CCCCEEEEEECCCCEEEEEHHHHHCCCC
Q ss_conf 1789806882787551121212--3444422223576765307899985---7998599997489789963887402333
Q gi|254780353|r 562 RILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTR 636 (753)
Q Consensus 562 ~LLffTs~GkvY~l~a~~Ips~--~~kG~pI~~ll~l~~~EkIv~~~~~---~~~~~lll~Tk~G~ikr~~l~~~~~~~k 636 (753)
T Consensus 555 ~LLfFTn~Grvy~lkv~eIPe~sr~skG~~i~nll~l~~~EkI~ail~v~~~~~~~~Lv~~Tk~G~IKRt~L~df~~~r~ 634 (822)
T PRK05560 555 TLLFFTNRGRVYRLKVYELPEGSRTAKGRPIVNLLPLEPGEKITAILPVREFDDDLYLFFATKNGTVKKTALSEFSNIRS 634 (822)
T ss_pred EEEEEECCCCEEEEEEEECCCCCCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEECHHHCCCCCC
T ss_conf 79999369949998916745668777884899716899997367877125678885699995797279713687225552
Q ss_pred CCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCEEEEEHHHCCCCCH-HHCCEEEECCCCCEEEEEEEECCCCCEEEEE
Q ss_conf 5627885368980568896189-8099995699389955787783361-2141334218787568999733888369994
Q gi|254780353|r 637 KGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 (753)
Q Consensus 637 ~Gk~~ikLk~~D~li~v~~~~~-d~iiliT~~Gk~LrF~~~eIr~~gR-gkGVk~i~Lkd~~~~~~~~~~~~e~~~il~~ 714 (753)
T Consensus 635 ~G~~AikLke~DeLv~v~l~~~~~dIil~T~~G~alRF~~~eVR~~GR~a~GVkgIkL~~gD~VV~~~vv-~~~~~iL~v 713 (822)
T PRK05560 635 NGLIAINLDEGDELIGVRLTDGDDDVLLFSANGKAIRFPEEDVRPMGRTARGVRGIKLREGDEVVSMSVL-RDEQFVLTV 713 (822)
T ss_pred CCEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCCCEECCCCCEEEEEEEE-CCCCEEEEE
T ss_conf 5519998589977999998489987999978973999506657777887768431551999989999985-799879999
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 177566451143225444136660275526776861049
Q gi|254780353|r 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 (753)
Q Consensus 715 t~~g~~k~~~~~~~~~~~RggkG~~~~k~~~K~gklV~A 753 (753)
T Consensus 714 Te~G~GKRt~~~eyr~~~RGgkGv~~ik~~~k~G~lv~~ 752 (822)
T PRK05560 714 TENGYGKRTPAEEYRLQGRGGKGVIAIKITERNGKLVGA 752 (822)
T ss_pred ECCCEEEECCHHHCCCCCCCCCCEEEEEECCCCCCEEEE
T ss_conf 189805305288837557787775889964888848999