HHsearch alignment for GI: 254780353 and conserved domain: PRK05561
>PRK05561 DNA topoisomerase IV subunit A; Validated.
Probab=100.00 E-value=0 Score=2050.96 Aligned_cols=737 Identities=47% Similarity=0.823 Sum_probs=708.2
Q ss_pred CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCC
Q ss_conf 66542456653199999988888889998510476411289704689999999868999898035405366654276887
Q gi|254780353|r 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 (753)
Q Consensus 10 ~~~~~~~i~~~~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPH 89 (753)
T Consensus 4 ~~~~~e~i~~~~~~~~~~~~yl~Ya~svi~~RalPd~rDGlKPv~RRily~m~~~~l~~~~~~~KsarivG~v~GkyHPH 83 (745)
T PRK05561 4 PDPMSEGIEDLPLEEFLEERYLRYSMYVIMDRALPDVRDGLKPVQRRILYAMSELGLTPDAKFKKSARTVGDVLGKYHPH 83 (745)
T ss_pred CCCHHCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHCCCCCCC
T ss_conf 98320581572389999988999899999851277644588609999999999728999999736316641005577898
Q ss_pred HHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 47899999996100132166132678870886779710024689985599999984218786175216799632422312
Q gi|254780353|r 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169 (753)
Q Consensus 90 Gd~s~y~a~v~maq~~~~~~pli~g~GnfGs~~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp 169 (753)
T Consensus 84 GD~siY~a~vrmaQ~f~~r~plidg~GNfGsidgd~~AAmRYTE~rls~~~~~~l~di~~~tv~f~~n~D~~~~EP~vLP 163 (745)
T PRK05561 84 GDSAIYDAMVRMAQDFSYRYPLVDGQGNFGSIDGDPAAAMRYTEARLSKIAELLLEEIDEGTVDFVPNFDGTLEEPTVLP 163 (745)
T ss_pred CHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEC
T ss_conf 70479999999733013157514278877899998437678898876999999996306475132058799976755430
Q ss_pred CCCCHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCE
Q ss_conf 34526764266504677775167778899999999987286532013443203677887760106988999898503341
Q gi|254780353|r 170 SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 (753)
Q Consensus 170 ~~~P~lL~Ng~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~ 249 (753)
T Consensus 164 a~~PnlL~NG~~GIAvGmaTnIPpHNl~Ev~~a~i~~i~np~~t~~eL~~~i~GPDFPTGg~Ii~g~~~i~~ay~tGrG~ 243 (745)
T PRK05561 164 ARFPNLLLNGATGIAVGMATDIPPHNLREVIDAAIHLIDNPDATLEELMEFVPGPDFPTGGEIITGRDGIRKAYETGRGS 243 (745)
T ss_pred CCCCHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHCCCE
T ss_conf 46874110488624876644879976699999999874499999999983188997998838972889999999847670
Q ss_pred EEEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC--EEEEEEEECCCCCHHHHHH
Q ss_conf 59999999864378840799952420021689999999986402221345776406766--0588985045458899999
Q gi|254780353|r 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLME 327 (753)
Q Consensus 250 i~~r~k~~~e~~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeSd~~--~~~vi~~~~r~~~~~~vl~ 327 (753)
T Consensus 244 i~iRak~~iE~~~~g~~~IvItEIPY~vnk~~liekIa~lv~~kki~gI~dvrDESdr~g~iRIVIelK~~~~d~~~vln 323 (745)
T PRK05561 244 IRVRARWEIEDLARGQWQIVITELPYQVSKAKLIEQIAEQMQAKKLPGIADVRDESDRENPVRIVIEPKSNRVDPEALMN 323 (745)
T ss_pred EEEEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEEEEECCCCCCHHHHHH
T ss_conf 99988999996379841799996787684899999999999708664102410366787877999997888879999999
Q ss_pred HHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87542000012233113331268972204999999899998999999999999999999999999998641078999975
Q gi|254780353|r 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407 (753)
Q Consensus 328 ~Lyk~T~Lq~sf~~N~~~l~~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~iI 407 (753)
T Consensus 324 ~Lyk~T~Lq~sf~~N~~al~~dg~P~~l~Lk~iL~~~l~hR~~vi~rrt~~~L~Ka~~RlhIleGLliA~~~iD~VI~iI 403 (745)
T PRK05561 324 HLFATTDLESSYRVNMNVIGLDGRPRVKGLKEILSEWLDHRREVVTRRSQFRLDKVEKRLHILEGLLIAFLNIDEVIEII 403 (745)
T ss_pred HHHHHCCCHHHCCCEEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 99985762421371489993799755827999999999999999999999999999999999988999996768999999
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 20000110000002577577889988789999889999766678999988776544203978878999999999987417
Q gi|254780353|r 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 (753)
Q Consensus 408 R~s~~~k~~L~~~f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfg 487 (753)
T Consensus 404 R~S~dak~~L~~~f~lse~QA~AIL~mrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~~~~iI~~EL~eik~kfg 483 (745)
T PRK05561 404 RESDEPKANLMARFGLTEIQAEAILELRLRRLAKLEEIEIRKEQDELRKEIAELEAILASERKLWKLIKKELKADAKKFG 483 (745)
T ss_pred HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 70632667775550879999999999999998766799999999999999999999963899999999999999998638
Q ss_pred CCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCCEEEEECCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE
Q ss_conf 74334555420000110000001100245667059987101020256554455322345555540121111478178980
Q gi|254780353|r 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567 (753)
Q Consensus 488 d~~~~~~RRT~iie~~~~~~~~~~EdlI~~E~v~V~LS~~GyIKr~k~~~~~~~~~~~KegD~l~~~~~~~t~d~LLffT 567 (753)
T Consensus 484 d~-----RRT~I~~~-~~~~~i~~edlI~~E~v~V~lS~~GyIKr~k~~~~~~~~~~~Ke~D~v~~~~~~~T~d~LLfFT 557 (745)
T PRK05561 484 DP-----RRTPIEER-EEAKAIDEEALVPDEPVTVVLSKKGWVRRAKGHDIDPAGLGYKEGDSLLFAFEARTTDKLLFFT 557 (745)
T ss_pred CC-----CCCCCCCC-CCCCCCCHHHHCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEE
T ss_conf 99-----86302267-4202378777176766189981780499844888675445677785325899980697699995
Q ss_pred CCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCEEEEEHHHHHCCCCCCEEEEEECCC
Q ss_conf 68827875511212123444422223576765307899985799859999748978996388740233356278853689
Q gi|254780353|r 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 (753)
Q Consensus 568 s~GkvY~l~a~~Ips~~~kG~pI~~ll~l~~~EkIv~~~~~~~~~~lll~Tk~G~ikr~~l~~~~~~~k~Gk~~ikLk~~ 647 (753)
T Consensus 558 n~Grvy~lkv~~IP~~r~~G~pi~nll~L~~~EkIv~vl~~~~~~~lllaTk~G~~kr~~l~e~~~~~k~G~~ai~L~~g 637 (745)
T PRK05561 558 STGRVYSLPVHELPSARGQGEPLTGLIDLEPGEEIVHVLVGDPDQKLLLASSAGYGFVVSEEDLVGRNRAGKAVINLKDG 637 (745)
T ss_pred CCCEEEEEEHHHCCCCCCCCCCHHHCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHHCCCCCCCEEEEEECCC
T ss_conf 79759998922087866788089880689999969999985898769999789329997869800446267188861899
Q ss_pred CCEEEEEECCC--CEEEEEECCCCEEEEEHHHCCCCCHHHCCEEEECCCCC-EEEEEEEECCCCCEEEEECCCCCCCCCH
Q ss_conf 80568896189--80999956993899557877833612141334218787-5689997338883699941775664511
Q gi|254780353|r 648 EKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSEN 724 (753)
Q Consensus 648 D~li~v~~~~~--d~iiliT~~Gk~LrF~~~eIr~~gRgkGVk~i~Lkd~~-~~~~~~~~~~e~~~il~~t~~g~~k~~~ 724 (753)
T Consensus 638 Delv~~~~i~~~~d~I~lvT~~Gk~lrF~~~evr~~gRgkGVkgikLk~~D~Vv~~~vv~~~~~l~v~s~~~~g~~k~t~ 717 (745)
T PRK05561 638 DKVLAPVPVEGDEDSLAAITQRGRLLVFPLSELPELSRGKGVKLIELKKEEGLADLAVLPPGDGLTLHAGKRKLTLKPKD 717 (745)
T ss_pred CEEEEEEEECCCCCEEEEEECCCCEEEEEHHHCCCCCCCCCCCEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCCC
T ss_conf 88988899469998899995898289979888777575468014766899989999998588834999867876345551
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 43225444136660275526776861049
Q gi|254780353|r 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 (753)
Q Consensus 725 ~~~~~~~~RggkG~~~~k~~~K~gklV~A 753 (753)
T Consensus 718 l~~y~-~~Rgg~G~~~~k~~~k~gk~~~~ 745 (745)
T PRK05561 718 LEEYR-GKRARRGSLLPRGLQRVDRLSPA 745 (745)
T ss_pred HHHHC-CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67746-22477886788888878971789