HHsearch alignment for GI: 254780353 and conserved domain: PRK09631

>PRK09631 DNA topoisomerase IV subunit A; Provisional.
Probab=100.00  E-value=0  Score=1274.91  Aligned_cols=592  Identities=28%  Similarity=0.414  Sum_probs=486.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             19999998888888999851047641128970468999999986899989803540536665427688747899999996
Q gi|254780353|r   21 SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR  100 (753)
Q Consensus        21 ~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~s~y~a~v~  100 (753)
T Consensus         2 ~i~~~~~~~~l~Ya~~VI~~RAlPdv~DGLKPvqRRiL~~m~~~~---~~~~~K~A~ivG~~m-kyHPHGd~siy~alV~   77 (626)
T PRK09631          2 DIKTLLKDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMH---DGNFHKVANVVGNTM-KYHPHGDTSIYEALVN   77 (626)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC---CCCCCEEEEEECCCC-CCCCCCCHHHHHHHHH
T ss_conf             868999999998889998850277521488659999999998648---999857628850511-2689982479999999


Q ss_pred             HCCHHHCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHCC
Q ss_conf             100132166132678870886-7797100246899855999999842187861752167996324223123452676426
Q gi|254780353|r  101 LAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG  179 (753)
Q Consensus       101 maq~~~~~~pli~g~GnfGs~-~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~P~lL~Ng  179 (753)
T Consensus        78 maq----~~~lid~qGNfGsi~~gD~aAA~RYtEaRls~~a~e~l--~~~~tv~~~~nyDg~~~EP~vLP~~~PnLL~nG  151 (626)
T PRK09631         78 IAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTPLAFEVL--YSKEITSYEPSYDGRNNEPLIFPAKIPVILIQG  151 (626)
T ss_pred             HHC----CCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH--CCCCCCEECCCCCCCCCCCEEEECCCCHHHHCC
T ss_conf             856----57605278888899998834566689897799999983--787851201278987446405553573777526


Q ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEEE
Q ss_conf             65046777751677788999999999872865320134432036778877601069889998985033415999999986
Q gi|254780353|r  180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE  259 (753)
Q Consensus       180 ~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i~~r~k~~~e  259 (753)
T Consensus       152 ~~GIAVGmaT~IpPHNl~Evida~i~~l~~~~~~~--------~PDFPTGG~i~-~-----~~Y~tG~G~i~vRak~e~~  217 (626)
T PRK09631        152 SEGIAVGMAAKILPHNFNEILEAVKSELLGESYDL--------YPDFPTGGIVD-V-----NEYADGNGKVLVRAKIETT  217 (626)
T ss_pred             CCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC--------CCCCCCCCCCC-H-----HHHHCCCEEEEEEEEEEEC
T ss_conf             74221222106899888999999998533898766--------99999875103-3-----2563486279999999981


Q ss_pred             ECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             43788407999524200216899999999864022213457764067660588985045458899999875420000122
Q gi|254780353|r  260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF  339 (753)
Q Consensus       260 ~~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeSd~~~~~vi~~~~r~~~~~~vl~~Lyk~T~Lq~sf  339 (753)
T Consensus       218 ~----~~~ivItEiPy~v~k~~lie~I~~~~~~~ki~-I~~i~D~s~~~vrIvi~l-k~~~~~~~vln~Ly~~T~lq~sf  291 (626)
T PRK09631        218 D----EKTIVIRELPFGETTESLIASIEKAIRKNYIK-VSSINDFTAENVEIELKL-PRGVYASEVIEKLYHYTNCQVSI  291 (626)
T ss_pred             C----CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCEEEEEEE-CCCCCHHHHHHHHHHHCCHHHEE
T ss_conf             7----83599995687777899999999999725676-211414689827999998-99999899999987509713217


Q ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCC
Q ss_conf             33113331268972204999999899998999999999999999999999999998641-07899997520000110000
Q gi|254780353|r  340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL-NIDEIIAIIRNEDKPKPVMV  418 (753)
Q Consensus       340 ~~N~~~l~~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~-~ID~vI~iIR~s~~~k~~L~  418 (753)
T Consensus       292 ~~n~~ai~~~-~P~~l~l~eiL~~~~~h~~~vl~r~le~~l~k~~er~H~~sLe~IfIe~rIy~~Ie~~~~~e~v~~~i~  370 (626)
T PRK09631        292 SVNLLLLSDR-YPVIYTVTDIIKFHAEHLQKILKMELELERSKILEKIFSKTLEQIFIEKKIYKILETISKEEDVVSIVL  370 (626)
T ss_pred             CCEEEEEECC-EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             6268999899-827987999999999999999999999889989986899999999866668999884201688999999


Q ss_pred             CC---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             00---------257757788998878999988999976667899998877654420397887899999999998741774
Q gi|254780353|r  419 SR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS  489 (753)
Q Consensus       419 ~~---------f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~  489 (753)
T Consensus       371 ~~l~pf~~~l~r~ite~d~~aLleirL~RIT~~didK~~eei~~L~~eI~eI~~~L~---~l~~~~I~~l~~Lk~kYG~~  447 (626)
T PRK09631        371 SELLPFKSSLSRDVTEDDVENLLKIPIRKISLFDIDKNNKDIRILNKELKSIESNIK---SIKGYAINFIDKLLAKYSKE  447 (626)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCC
T ss_conf             877767887630157999999999899885343088799999999999999986377---68999999999999873547


Q ss_pred             CCCCCCCCCEEECCCHHHHHHHHCCCCCCCCEEEEECCCEEEC--------CCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf             3345554200001100000011002456670599871010202--------56554455322345555540121111478
Q gi|254780353|r  490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTD  561 (753)
Q Consensus       490 ~~~~~RRT~iie~~~~~~~~~~EdlI~~E~v~V~LS~~GyIKr--------~k~~~~~~~~~~~KegD~l~~~~~~~t~d  561 (753)
T Consensus       448 ~---~RKTEI~-----------------------lfd~i~aKrVa~~n~Kly~nr~~GFiGtslKkdDfV---~~CSd~D  498 (626)
T PRK09631        448 Y---KRKTEIS-----------------------LIKSKNVREIATKNMKVYLNLETGFVGTSLIDGEFI---GNASYYD  498 (626)
T ss_pred             C---CCEEEEE-----------------------EECCEEEEEEECCCCEEEECCCCCEEEECCCCCCEE---EECCCCC
T ss_conf             7---7257999-----------------------764443699570233256658885561035678456---7335665


Q ss_pred             CEEEEECCCEEEEEEHHHCCCCCCCCCCC--CCCCCCCCC-CEEEEEEEECCCCEEEEEECCCCEEEEEHHHHHCCCCCC
Q ss_conf             17898068827875511212123444422--223576765-307899985799859999748978996388740233356
Q gi|254780353|r  562 RILLLSTDGKAYTLPAGNLLSGRGHGEAI--QLLIDLNHN-QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG  638 (753)
Q Consensus       562 ~LLffTs~GkvY~l~a~~Ips~~~kG~pI--~~ll~l~~~-EkIv~~~~~~~~~~lll~Tk~G~ikr~~l~~~~~~~k~G  638 (753)
T Consensus       499 dILvF~d-G~y---kV~kV~~K~Fvgk~i~~v~v~~k~d~~~tiyn~IYrDgk~------g~~yiKRF~V~~~tr---d-  564 (626)
T PRK09631        499 KILIFKD-GSY---VLKNIEDKTFIDKKNVCVLVYDINNSKEQVFSIIYRDKLD------NFYYVKRFKIDKFIL---D-  564 (626)
T ss_pred             EEEEEEC-CEE---EEEECCCCCEECCCCEEEEEEECCCCCCEEEEEEEECCCC------CCEEEEEEEECCEEE---C-
T ss_conf             3999989-859---9998577605468837999985278765079999986998------836899988323884---2-


Q ss_pred             EEEEEECCCCCEEEEEECCCCEEEEEECCCCEE--EEEHHHCCCCCH-HHCCEEEEC
Q ss_conf             278853689805688961898099995699389--955787783361-214133421
Q gi|254780353|r  639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL--IFSIDQIPEMSR-GKGVRLQSY  692 (753)
Q Consensus       639 k~~ikLk~~D~li~v~~~~~d~iiliT~~Gk~L--rF~~~eIr~~gR-gkGVk~i~L  692 (753)
T Consensus       565 K~Y~l~~~~s~~l~fs~n~n---l~~~~~~k~~~~~~df~~~~iKgr~skGn~vtk~  618 (626)
T PRK09631        565 KVYEFLPENDEFLDFSLNPE---FVPFSRSKDIVKMIEIDNFMVKSRSSKGKRISSR  618 (626)
T ss_pred             CCCCCCCCCCEEEEEEECCC---CCCCCCCCCEEEEECHHHEEEECCCCCCEEEECC
T ss_conf             52245799987999997776---5745442451477321140341444555176314