HHsearch alignment for GI: 254780353 and conserved domain: PRK09631
>PRK09631 DNA topoisomerase IV subunit A; Provisional.
Probab=100.00 E-value=0 Score=1274.91 Aligned_cols=592 Identities=28% Similarity=0.414 Sum_probs=486.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 19999998888888999851047641128970468999999986899989803540536665427688747899999996
Q gi|254780353|r 21 SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100 (753)
Q Consensus 21 ~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~s~y~a~v~ 100 (753)
T Consensus 2 ~i~~~~~~~~l~Ya~~VI~~RAlPdv~DGLKPvqRRiL~~m~~~~---~~~~~K~A~ivG~~m-kyHPHGd~siy~alV~ 77 (626)
T PRK09631 2 DIKTLLKDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMH---DGNFHKVANVVGNTM-KYHPHGDTSIYEALVN 77 (626)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC---CCCCCEEEEEECCCC-CCCCCCCHHHHHHHHH
T ss_conf 868999999998889998850277521488659999999998648---999857628850511-2689982479999999
Q ss_pred HCCHHHCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHCC
Q ss_conf 100132166132678870886-7797100246899855999999842187861752167996324223123452676426
Q gi|254780353|r 101 LAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179 (753)
Q Consensus 101 maq~~~~~~pli~g~GnfGs~-~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~P~lL~Ng 179 (753)
T Consensus 78 maq----~~~lid~qGNfGsi~~gD~aAA~RYtEaRls~~a~e~l--~~~~tv~~~~nyDg~~~EP~vLP~~~PnLL~nG 151 (626)
T PRK09631 78 IAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTPLAFEVL--YSKEITSYEPSYDGRNNEPLIFPAKIPVILIQG 151 (626)
T ss_pred HHC----CCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH--CCCCCCEECCCCCCCCCCCEEEECCCCHHHHCC
T ss_conf 856----57605278888899998834566689897799999983--787851201278987446405553573777526
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEEE
Q ss_conf 65046777751677788999999999872865320134432036778877601069889998985033415999999986
Q gi|254780353|r 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 (753)
Q Consensus 180 ~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i~~r~k~~~e 259 (753)
T Consensus 152 ~~GIAVGmaT~IpPHNl~Evida~i~~l~~~~~~~--------~PDFPTGG~i~-~-----~~Y~tG~G~i~vRak~e~~ 217 (626)
T PRK09631 152 SEGIAVGMAAKILPHNFNEILEAVKSELLGESYDL--------YPDFPTGGIVD-V-----NEYADGNGKVLVRAKIETT 217 (626)
T ss_pred CCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC--------CCCCCCCCCCC-H-----HHHHCCCEEEEEEEEEEEC
T ss_conf 74221222106899888999999998533898766--------99999875103-3-----2563486279999999981
Q ss_pred ECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 43788407999524200216899999999864022213457764067660588985045458899999875420000122
Q gi|254780353|r 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339 (753)
Q Consensus 260 ~~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeSd~~~~~vi~~~~r~~~~~~vl~~Lyk~T~Lq~sf 339 (753)
T Consensus 218 ~----~~~ivItEiPy~v~k~~lie~I~~~~~~~ki~-I~~i~D~s~~~vrIvi~l-k~~~~~~~vln~Ly~~T~lq~sf 291 (626)
T PRK09631 218 D----EKTIVIRELPFGETTESLIASIEKAIRKNYIK-VSSINDFTAENVEIELKL-PRGVYASEVIEKLYHYTNCQVSI 291 (626)
T ss_pred C----CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCEEEEEEE-CCCCCHHHHHHHHHHHCCHHHEE
T ss_conf 7----83599995687777899999999999725676-211414689827999998-99999899999987509713217
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCC
Q ss_conf 33113331268972204999999899998999999999999999999999999998641-07899997520000110000
Q gi|254780353|r 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL-NIDEIIAIIRNEDKPKPVMV 418 (753)
Q Consensus 340 ~~N~~~l~~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~-~ID~vI~iIR~s~~~k~~L~ 418 (753)
T Consensus 292 ~~n~~ai~~~-~P~~l~l~eiL~~~~~h~~~vl~r~le~~l~k~~er~H~~sLe~IfIe~rIy~~Ie~~~~~e~v~~~i~ 370 (626)
T PRK09631 292 SVNLLLLSDR-YPVIYTVTDIIKFHAEHLQKILKMELELERSKILEKIFSKTLEQIFIEKKIYKILETISKEEDVVSIVL 370 (626)
T ss_pred CCEEEEEECC-EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 6268999899-827987999999999999999999999889989986899999999866668999884201688999999
Q ss_pred CC---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 00---------257757788998878999988999976667899998877654420397887899999999998741774
Q gi|254780353|r 419 SR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 (753)
Q Consensus 419 ~~---------f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~ 489 (753)
T Consensus 371 ~~l~pf~~~l~r~ite~d~~aLleirL~RIT~~didK~~eei~~L~~eI~eI~~~L~---~l~~~~I~~l~~Lk~kYG~~ 447 (626)
T PRK09631 371 SELLPFKSSLSRDVTEDDVENLLKIPIRKISLFDIDKNNKDIRILNKELKSIESNIK---SIKGYAINFIDKLLAKYSKE 447 (626)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCC
T ss_conf 877767887630157999999999899885343088799999999999999986377---68999999999999873547
Q ss_pred CCCCCCCCCEEECCCHHHHHHHHCCCCCCCCEEEEECCCEEEC--------CCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 3345554200001100000011002456670599871010202--------56554455322345555540121111478
Q gi|254780353|r 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTD 561 (753)
Q Consensus 490 ~~~~~RRT~iie~~~~~~~~~~EdlI~~E~v~V~LS~~GyIKr--------~k~~~~~~~~~~~KegD~l~~~~~~~t~d 561 (753)
T Consensus 448 ~---~RKTEI~-----------------------lfd~i~aKrVa~~n~Kly~nr~~GFiGtslKkdDfV---~~CSd~D 498 (626)
T PRK09631 448 Y---KRKTEIS-----------------------LIKSKNVREIATKNMKVYLNLETGFVGTSLIDGEFI---GNASYYD 498 (626)
T ss_pred C---CCEEEEE-----------------------EECCEEEEEEECCCCEEEECCCCCEEEECCCCCCEE---EECCCCC
T ss_conf 7---7257999-----------------------764443699570233256658885561035678456---7335665
Q ss_pred CEEEEECCCEEEEEEHHHCCCCCCCCCCC--CCCCCCCCC-CEEEEEEEECCCCEEEEEECCCCEEEEEHHHHHCCCCCC
Q ss_conf 17898068827875511212123444422--223576765-307899985799859999748978996388740233356
Q gi|254780353|r 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAI--QLLIDLNHN-QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638 (753)
Q Consensus 562 ~LLffTs~GkvY~l~a~~Ips~~~kG~pI--~~ll~l~~~-EkIv~~~~~~~~~~lll~Tk~G~ikr~~l~~~~~~~k~G 638 (753)
T Consensus 499 dILvF~d-G~y---kV~kV~~K~Fvgk~i~~v~v~~k~d~~~tiyn~IYrDgk~------g~~yiKRF~V~~~tr---d- 564 (626)
T PRK09631 499 KILIFKD-GSY---VLKNIEDKTFIDKKNVCVLVYDINNSKEQVFSIIYRDKLD------NFYYVKRFKIDKFIL---D- 564 (626)
T ss_pred EEEEEEC-CEE---EEEECCCCCEECCCCEEEEEEECCCCCCEEEEEEEECCCC------CCEEEEEEEECCEEE---C-
T ss_conf 3999989-859---9998577605468837999985278765079999986998------836899988323884---2-
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEEECCCCEE--EEEHHHCCCCCH-HHCCEEEEC
Q ss_conf 278853689805688961898099995699389--955787783361-214133421
Q gi|254780353|r 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL--IFSIDQIPEMSR-GKGVRLQSY 692 (753)
Q Consensus 639 k~~ikLk~~D~li~v~~~~~d~iiliT~~Gk~L--rF~~~eIr~~gR-gkGVk~i~L 692 (753)
T Consensus 565 K~Y~l~~~~s~~l~fs~n~n---l~~~~~~k~~~~~~df~~~~iKgr~skGn~vtk~ 618 (626)
T PRK09631 565 KVYEFLPENDEFLDFSLNPE---FVPFSRSKDIVKMIEIDNFMVKSRSSKGKRISSR 618 (626)
T ss_pred CCCCCCCCCCEEEEEEECCC---CCCCCCCCCEEEEECHHHEEEECCCCCCEEEECC
T ss_conf 52245799987999997776---5745442451477321140341444555176314