HHsearch alignment for GI: 254780353 and conserved domain: PRK12758
>PRK12758 DNA topoisomerase IV subunit A; Provisional.
Probab=100.00 E-value=0 Score=860.95 Aligned_cols=603 Identities=26% Similarity=0.433 Sum_probs=475.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 31999999888888899985104764112897046899999998689998980354053666542768874789999999
Q gi|254780353|r 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99 (753)
Q Consensus 20 ~~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~s~y~a~v 99 (753)
T Consensus 23 ~~~~gmy~~wfldYasyvil~RAvp~i~DGlKPvqRril~sm~~~---~dgr~~KvAnivG~tm-~yhPHGdasi~dalv 98 (879)
T PRK12758 23 THVGGMYQNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRL---DDGRYNKVANIVGHTM-QYHPHGDASIGDALV 98 (879)
T ss_pred EECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH---HCCCCCEEEEECCCCC-CCCCCCCCHHHHHHH
T ss_conf 450134788888776865335205640027853899999999861---0776302320102320-248887423899999
Q ss_pred HHCCHHHCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHC
Q ss_conf 6100132166132678870886-779710024689985599999984218786175216799632422312345267642
Q gi|254780353|r 100 RLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178 (753)
Q Consensus 100 ~maq~~~~~~pli~g~GnfGs~-~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~P~lL~N 178 (753)
T Consensus 99 ~~~q----k~~lid~qGN~Gni~tgd~aaA~RYiE~rls~fa~ev~--fn~~~t~~~~sYDgr~kEP~~lP~kfPllL~~ 172 (879)
T PRK12758 99 QLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFALEVL--FNPKTTEWQLSYDGRKKEPVTLPVKFPLLLAQ 172 (879)
T ss_pred HHHC----CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHE--ECCCCCEEEECCCCCCCCCCCCCCCCHHHHHC
T ss_conf 8624----33368647776676878722314467564207779870--38775534545687657864255211677761
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCC--CEEEEEEEE
Q ss_conf 665046777751677788999999999872865320134432036778877601069889998985033--415999999
Q gi|254780353|r 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR--GGFRVRARW 256 (753)
Q Consensus 179 g~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~--G~i~~r~k~ 256 (753)
T Consensus 173 g~eGIAVGlstkilphNf~El~~a~i~~l~~~~~~l~--------PDF~tgG~~d--~----s~YndG~rgG~v~vRaki 238 (879)
T PRK12758 173 GVEGIAVGLSSKILPHNFNELIDASIAYLRGEEFKLY--------PDFQTGGSID--V----SNYNDGERGGRVKVRAKI 238 (879)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEC--------CCCCCCCEEC--H----HHHHCCCCCCEEEEEEEE
T ss_conf 6762685001464887889999999999759985488--------7898875405--6----451044458548999999
Q ss_pred EEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 98643788407999524200216899999999864022213457764067660588985045458899999875420000
Q gi|254780353|r 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336 (753)
Q Consensus 257 ~~e~~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeSd~~~~~vi~~~~r~~~~~~vl~~Lyk~T~Lq 336 (753)
T Consensus 239 ~~~d----~~tl~I~eiP~g~tt~sLi~SI~kAn~kGKIK-Ikki~DnTa~~VEI~i~L-~~Gvs~dktidaLYAFTdCE 312 (879)
T PRK12758 239 NKLD----NKTLVITEIPYGTTTSSLIDSILKANDKGKIK-IKKVDDNTAADVEILVHL-APGVSSDKTIDALYAFTDCE 312 (879)
T ss_pred EEEC----CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC-EEEECCCCCCCEEEEEEC-CCCCCHHHHHHHHHHHCCCE
T ss_conf 9805----96699985499875799999999998759711-466324677740699983-89998789899876303562
Q ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH---HHH--------HHHHH
Q ss_conf 12233113331268972204999999899998999999999999999999999--999998---641--------07899
Q gi|254780353|r 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLI---AYL--------NIDEI 403 (753)
Q Consensus 337 ~sf~~N~~~l~~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhI--leGl~~---a~~--------~ID~v 403 (753)
T Consensus 313 vSISPn~cVI~dn-kP~fl~VseiLk~std~t~~LLk~ELei~l~eLeekwH~~SLErIFIEnRIYrd~~IEe~~t~E~V 391 (879)
T PRK12758 313 VSISPNCCVIDDD-KPHFLGVSEVLRISTDRTLDLLKQELEIQLEELLEQLHFASLEKIFIEERIYKDKEFEESETWEDA 391 (879)
T ss_pred ECCCCCEEEEECC-CCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHH
T ss_conf 2058764999899-443842899999999999999999999889999999999989999977565144000355689999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 99752000011000000257757788998878999988999976667899998877654420397887899999999998
Q gi|254780353|r 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 (753)
Q Consensus 404 I~iIR~s~~~k~~L~~~f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eik 483 (753)
T Consensus 392 i~~I~~gL~Pf~~~L~R-eVt~eDI~rLtEIkIkRISkFDidKa~e~I~~le~~I~eVk~nL~n---lt~YaI~yf~~Lk 467 (879)
T PRK12758 392 LLHIDDRLEPFKKQFIR-EVTEDDILRLTEIKMKRILKFNSDKAEELIARLEEDIAEVEHHLEH---IIDYTIAWFTMLK 467 (879)
T ss_pred HHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_conf 99999999998886337-8888999998631377755418788999999999999999988887---8999999999999
Q ss_pred HHCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCCEEEEECCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCE
Q ss_conf 74177433455542000011000000110024566705998710102025655445532234555554012111147817
Q gi|254780353|r 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 (753)
Q Consensus 484 kkfgd~~~~~~RRT~iie~~~~~~~~~~EdlI~~E~v~V~LS~~GyIKr~k~~~~~~~~~~~KegD~l~~~~~~~t~d~L 563 (753)
T Consensus 468 kKYGkg~---~RKTEI~~Fd~I~A~---kVa~~N~KL--------YvNRee----GFiGt~lKkdE---fv~dCSdiDDI 526 (879)
T PRK12758 468 EKYGKGF---PRRTELRNFDTIEAT---KVVEANEKL--------YINREE----GFIGTGLKKDE---FVADCSDIDDV 526 (879)
T ss_pred HHHCCCC---CCCCEEEECCCEEHH---HHHHHHCEE--------EEECCC----CEECCCCCCCC---EEEECCCCCEE
T ss_conf 9866999---764034100315277---773531779--------982456----61101324774---44303571228
Q ss_pred EEEECCCEEEEEEHHHCCCCCCCCCCCC--CCCCCCCCCEEEEEEEECCCCEEEEEECCCCEEEEEHHHHHCCCCCCEE-
Q ss_conf 8980688278755112121234444222--2357676530789998579985999974897899638874023335627-
Q gi|254780353|r 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT- 640 (753)
Q Consensus 564 LffTs~GkvY~l~a~~Ips~~~kG~pI~--~ll~l~~~EkIv~~~~~~~~~~lll~Tk~G~ikr~~l~~~~~~~k~Gk~- 640 (753)
T Consensus 527 IvF~kDG~~~VtKV~d---K~FVGKdIihv~vfkK~D~rtiYN~IYrDGk~g------~syiKRF~Vtgvt---RDk~Y~ 594 (879)
T PRK12758 527 IVFYRDGKYMVTKVAD---KKFVGKDIIYVAVFKKNDKRTIYNVIYRDGKSG------PSYIKRFNVTGVT---RDKEYD 594 (879)
T ss_pred EEEECCCCEEEEECCC---CEEECCCCEEEEEEECCCCCEEEEEEEECCCCC------CEEEEEEECCCEE---ECCCCC
T ss_conf 9992388589998167---445336757999750588732889999738888------5655763124143---134024
Q ss_pred EEEECCCCCEEEEEECC-CC-EEEE--EECCC--CEEEEEH--HHCCCCCH-HHCCEEE
Q ss_conf 88536898056889618-98-0999--95699--3899557--87783361-2141334
Q gi|254780353|r 641 FLKVSSEEKMKLVVKVT-GD-HVAV--VGENR--KLLIFSI--DQIPEMSR-GKGVRLQ 690 (753)
Q Consensus 641 ~ikLk~~D~li~v~~~~-~d-~iil--iT~~G--k~LrF~~--~eIr~~gR-gkGVk~i 690 (753)
T Consensus 595 lt~g~~gSkvlYfsaNpNGEAE~V~v~Lr~~~~~kkl~~d~DFsdi~IKGR~skGNivT 653 (879)
T PRK12758 595 LTQGTPGSRVLYFSANPNGEAEVVTVTLKPNPRIRKLVFEKDFSEIAIKGRQSQGNILT 653 (879)
T ss_pred CCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCEEEECCHHHHHCCCCCCCCEEEE
T ss_conf 66799998899995189986268999964585534156413677710014455651675