HHsearch alignment for GI: 254780353 and conserved domain: PRK12758

>PRK12758 DNA topoisomerase IV subunit A; Provisional.
Probab=100.00  E-value=0  Score=860.95  Aligned_cols=603  Identities=26%  Similarity=0.433  Sum_probs=475.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             31999999888888899985104764112897046899999998689998980354053666542768874789999999
Q gi|254780353|r   20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV   99 (753)
Q Consensus        20 ~~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~s~y~a~v   99 (753)
T Consensus        23 ~~~~gmy~~wfldYasyvil~RAvp~i~DGlKPvqRril~sm~~~---~dgr~~KvAnivG~tm-~yhPHGdasi~dalv   98 (879)
T PRK12758         23 THVGGMYQNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRL---DDGRYNKVANIVGHTM-QYHPHGDASIGDALV   98 (879)
T ss_pred             EECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH---HCCCCCEEEEECCCCC-CCCCCCCCHHHHHHH
T ss_conf             450134788888776865335205640027853899999999861---0776302320102320-248887423899999


Q ss_pred             HHCCHHHCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHC
Q ss_conf             6100132166132678870886-779710024689985599999984218786175216799632422312345267642
Q gi|254780353|r  100 RLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN  178 (753)
Q Consensus       100 ~maq~~~~~~pli~g~GnfGs~-~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~P~lL~N  178 (753)
T Consensus        99 ~~~q----k~~lid~qGN~Gni~tgd~aaA~RYiE~rls~fa~ev~--fn~~~t~~~~sYDgr~kEP~~lP~kfPllL~~  172 (879)
T PRK12758         99 QLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFALEVL--FNPKTTEWQLSYDGRKKEPVTLPVKFPLLLAQ  172 (879)
T ss_pred             HHHC----CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHE--ECCCCCEEEECCCCCCCCCCCCCCCCHHHHHC
T ss_conf             8624----33368647776676878722314467564207779870--38775534545687657864255211677761


Q ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCC--CEEEEEEEE
Q ss_conf             665046777751677788999999999872865320134432036778877601069889998985033--415999999
Q gi|254780353|r  179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR--GGFRVRARW  256 (753)
Q Consensus       179 g~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~--G~i~~r~k~  256 (753)
T Consensus       173 g~eGIAVGlstkilphNf~El~~a~i~~l~~~~~~l~--------PDF~tgG~~d--~----s~YndG~rgG~v~vRaki  238 (879)
T PRK12758        173 GVEGIAVGLSSKILPHNFNELIDASIAYLRGEEFKLY--------PDFQTGGSID--V----SNYNDGERGGRVKVRAKI  238 (879)
T ss_pred             CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEC--------CCCCCCCEEC--H----HHHHCCCCCCEEEEEEEE
T ss_conf             6762685001464887889999999999759985488--------7898875405--6----451044458548999999


Q ss_pred             EEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             98643788407999524200216899999999864022213457764067660588985045458899999875420000
Q gi|254780353|r  257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME  336 (753)
Q Consensus       257 ~~e~~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeSd~~~~~vi~~~~r~~~~~~vl~~Lyk~T~Lq  336 (753)
T Consensus       239 ~~~d----~~tl~I~eiP~g~tt~sLi~SI~kAn~kGKIK-Ikki~DnTa~~VEI~i~L-~~Gvs~dktidaLYAFTdCE  312 (879)
T PRK12758        239 NKLD----NKTLVITEIPYGTTTSSLIDSILKANDKGKIK-IKKVDDNTAADVEILVHL-APGVSSDKTIDALYAFTDCE  312 (879)
T ss_pred             EEEC----CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC-EEEECCCCCCCEEEEEEC-CCCCCHHHHHHHHHHHCCCE
T ss_conf             9805----96699985499875799999999998759711-466324677740699983-89998789899876303562


Q ss_pred             CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH---HHH--------HHHHH
Q ss_conf             12233113331268972204999999899998999999999999999999999--999998---641--------07899
Q gi|254780353|r  337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLI---AYL--------NIDEI  403 (753)
Q Consensus       337 ~sf~~N~~~l~~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhI--leGl~~---a~~--------~ID~v  403 (753)
T Consensus       313 vSISPn~cVI~dn-kP~fl~VseiLk~std~t~~LLk~ELei~l~eLeekwH~~SLErIFIEnRIYrd~~IEe~~t~E~V  391 (879)
T PRK12758        313 VSISPNCCVIDDD-KPHFLGVSEVLRISTDRTLDLLKQELEIQLEELLEQLHFASLEKIFIEERIYKDKEFEESETWEDA  391 (879)
T ss_pred             ECCCCCEEEEECC-CCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHH
T ss_conf             2058764999899-443842899999999999999999999889999999999989999977565144000355689999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             99752000011000000257757788998878999988999976667899998877654420397887899999999998
Q gi|254780353|r  404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK  483 (753)
Q Consensus       404 I~iIR~s~~~k~~L~~~f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eik  483 (753)
T Consensus       392 i~~I~~gL~Pf~~~L~R-eVt~eDI~rLtEIkIkRISkFDidKa~e~I~~le~~I~eVk~nL~n---lt~YaI~yf~~Lk  467 (879)
T PRK12758        392 LLHIDDRLEPFKKQFIR-EVTEDDILRLTEIKMKRILKFNSDKAEELIARLEEDIAEVEHHLEH---IIDYTIAWFTMLK  467 (879)
T ss_pred             HHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_conf             99999999998886337-8888999998631377755418788999999999999999988887---8999999999999


Q ss_pred             HHCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCCEEEEECCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCE
Q ss_conf             74177433455542000011000000110024566705998710102025655445532234555554012111147817
Q gi|254780353|r  484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI  563 (753)
Q Consensus       484 kkfgd~~~~~~RRT~iie~~~~~~~~~~EdlI~~E~v~V~LS~~GyIKr~k~~~~~~~~~~~KegD~l~~~~~~~t~d~L  563 (753)
T Consensus       468 kKYGkg~---~RKTEI~~Fd~I~A~---kVa~~N~KL--------YvNRee----GFiGt~lKkdE---fv~dCSdiDDI  526 (879)
T PRK12758        468 EKYGKGF---PRRTELRNFDTIEAT---KVVEANEKL--------YINREE----GFIGTGLKKDE---FVADCSDIDDV  526 (879)
T ss_pred             HHHCCCC---CCCCEEEECCCEEHH---HHHHHHCEE--------EEECCC----CEECCCCCCCC---EEEECCCCCEE
T ss_conf             9866999---764034100315277---773531779--------982456----61101324774---44303571228


Q ss_pred             EEEECCCEEEEEEHHHCCCCCCCCCCCC--CCCCCCCCCEEEEEEEECCCCEEEEEECCCCEEEEEHHHHHCCCCCCEE-
Q ss_conf             8980688278755112121234444222--2357676530789998579985999974897899638874023335627-
Q gi|254780353|r  564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT-  640 (753)
Q Consensus       564 LffTs~GkvY~l~a~~Ips~~~kG~pI~--~ll~l~~~EkIv~~~~~~~~~~lll~Tk~G~ikr~~l~~~~~~~k~Gk~-  640 (753)
T Consensus       527 IvF~kDG~~~VtKV~d---K~FVGKdIihv~vfkK~D~rtiYN~IYrDGk~g------~syiKRF~Vtgvt---RDk~Y~  594 (879)
T PRK12758        527 IVFYRDGKYMVTKVAD---KKFVGKDIIYVAVFKKNDKRTIYNVIYRDGKSG------PSYIKRFNVTGVT---RDKEYD  594 (879)
T ss_pred             EEEECCCCEEEEECCC---CEEECCCCEEEEEEECCCCCEEEEEEEECCCCC------CEEEEEEECCCEE---ECCCCC
T ss_conf             9992388589998167---445336757999750588732889999738888------5655763124143---134024


Q ss_pred             EEEECCCCCEEEEEECC-CC-EEEE--EECCC--CEEEEEH--HHCCCCCH-HHCCEEE
Q ss_conf             88536898056889618-98-0999--95699--3899557--87783361-2141334
Q gi|254780353|r  641 FLKVSSEEKMKLVVKVT-GD-HVAV--VGENR--KLLIFSI--DQIPEMSR-GKGVRLQ  690 (753)
Q Consensus       641 ~ikLk~~D~li~v~~~~-~d-~iil--iT~~G--k~LrF~~--~eIr~~gR-gkGVk~i  690 (753)
T Consensus       595 lt~g~~gSkvlYfsaNpNGEAE~V~v~Lr~~~~~kkl~~d~DFsdi~IKGR~skGNivT  653 (879)
T PRK12758        595 LTQGTPGSRVLYFSANPNGEAEVVTVTLKPNPRIRKLVFEKDFSEIAIKGRQSQGNILT  653 (879)
T ss_pred             CCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCEEEECCHHHHHCCCCCCCCEEEE
T ss_conf             66799998899995189986268999964585534156413677710014455651675