HHsearch alignment for GI: 254780353 and conserved domain: PTZ00108
>PTZ00108 DNA topoisomerase II; Provisional.
Probab=100.00 E-value=0 Score=496.76 Aligned_cols=439 Identities=21% Similarity=0.341 Sum_probs=337.9
Q ss_pred CCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHH--HCCCCCCH
Q ss_conf 4245665319999998888888999851047641128970468999999986899989803540536665--42768874
Q gi|254780353|r 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHG 90 (753)
Q Consensus 13 ~~~~i~~~~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v--~gkyhPHG 90 (753)
T Consensus 721 ld~~~~~i~~~dFinkELi~FS~~D-~~RSIPs~~DGlKp~QRKvl~~~fkrn~~~e---iKVaQlaGyVse~saYH-HG 795 (1506)
T PTZ00108 721 VDHKEKDLSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNLKNE---CKVAQLVGYIAEHSAYH-HG 795 (1506)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCHHH-HHHHCCHHHCCCCHHHHHHHHHHHHHCCCCC---EEHHHHHHHHHHHCCCC-CC
T ss_conf 3566785438774437888642887-6512411330577124424498786347762---23215088987630467-63
Q ss_pred HHHHHHHHHHHCCHH--HCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCEE
Q ss_conf 789999999610013--2166132678870886--7797100246899855999999842187861752167---99632
Q gi|254780353|r 91 DQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDS 163 (753)
Q Consensus 91 d~s~y~a~v~maq~~--~~~~pli~g~GnfGs~--~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~---D~~~~ 163 (753)
T Consensus 796 E~SL~~tIv~mAQ~fvGsNNinlL~P~GqFGtR~~GGkDaas~RYIfT~l~~~~r~iF~~~Dd~----lL~y~~ddg~~i 871 (1506)
T PTZ00108 796 ESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTRSIFNEYDDP----ILKYLNEEGQKI 871 (1506)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCHH----HHHCCCCCCCCC
T ss_conf 8999999999987535656631045578752545588755560257663158888538933022----550203689631
Q ss_pred EEEEECCCCCHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 42231234526764266504677775167778899999999987286532013443203677887760106988999898
Q gi|254780353|r 164 EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 (753)
Q Consensus 164 EP~~lp~~~P~lL~Ng~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y 243 (753)
T Consensus 872 EP~~Y~PiiPmvLvNG~~GIGTGwSt~ip~ynp~dii~ni~r~l~ge~~--~~m~Pwy~g--f-~-G~i----------~ 935 (1506)
T PTZ00108 872 EPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIIDNIKRYINKEPL--IPMIPWYKD--F-K-GRI----------E 935 (1506)
T ss_pred CCCEECCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC--CCCCCCCCC--C-C-CEE----------E
T ss_conf 5430205566787337762026634778999999999999998569988--627755379--6-2-169----------9
Q ss_pred HCCCCEEEEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCC-CCEEEEEEEECCCCCH
Q ss_conf 503341599999998643788407999524200216899999999864022213457764067-6605889850454588
Q gi|254780353|r 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDP 322 (753)
Q Consensus 244 ~tG~G~i~~r~k~~~e~~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeSd-~~~~~vi~~~~r~~~~ 322 (753)
T Consensus 936 ~~~~~~y~~~G~~~~~----~~~t~~ItELPi~~WT~~yKe~le~~~~~~~~~~i~d~~e~~t~~~V~F~i~~~~-~~~~ 1010 (1506)
T PTZ00108 936 SNGKTGYETIGIIHKI----DDDTLEINELPIKKWTQDYKEFLEELLTDEKHQLILDYIDNSSHEDICFTIKMDP-AKLK 1010 (1506)
T ss_pred ECCCCEEEEEEEEEEE----CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCEEEEEEEECH-HHHH
T ss_conf 8689718998799995----7987999858987626999999998750467774000043179975899999588-9989
Q ss_pred HHHHHHHHHHCCCCCCCCC-CEEEEE-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q ss_conf 9999987542000012233-113331-268972204999999899998999999999999999999999999---99864
Q gi|254780353|r 323 DLLMESIFMLSDMETRFPL-NMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG---LLIAY 397 (753)
Q Consensus 323 ~~vl~~Lyk~T~Lq~sf~~-N~~~l~-~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleG---l~~a~ 397 (753)
T Consensus 1011 ~~~~~gl~k~fKL~~~i~t~Nm~~Fd~~g~i~kY~~~~~Il~eF~~~Rl~~Y~kRK~~l~~~l~~~~~~l~nqaRFI~~v 1090 (1506)
T PTZ00108 1011 KAEEEGLEKVFKLKSTLTTTNMTLFDPNLKLQRYSTELDILKDFCFHRLKAYENRKSYLISKLEKEKKIISNKSKFILAI 1090 (1506)
T ss_pred HHHHHCHHHHHCCCCEEEECCEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98760666651123134205268988999966459999999999999999999999999999999999864255656640
Q ss_pred HH---------HHHHHHHHHCCC-CC-------C-CCCCC----------------CCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 10---------789999752000-01-------1-00000----------------025775778899887899998899
Q gi|254780353|r 398 LN---------IDEIIAIIRNED-KP-------K-PVMVS----------------RFSLTENQVDAILNLRLRSLRKLE 443 (753)
Q Consensus 398 ~~---------ID~vI~iIR~s~-~~-------k-~~L~~----------------~f~lse~QA~aIL~mrL~rLt~le 443 (753)
T Consensus 1091 i~~~l~v~nkkk~~li~eL~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~iwsLT~Er 1170 (1506)
T PTZ00108 1091 VNNELIVNKKKKKVLVEELYRKGYDPYKDINKIKKEEIFEQELLDAADNPEDNEEIIAGISVKDYDYLLSMPIFSLTLEK 1170 (1506)
T ss_pred CCCEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHCCCCCCCCCHHHCCCCCCCCCHHHHCCCHHHCCHHH
T ss_conf 06758993576899999999749997741124333010002210122355442010146776784366388123200999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 9976667899998877654420397887899999999998741
Q gi|254780353|r 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 (753)
Q Consensus 444 ~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkf 486 (753)
T Consensus 1171 ~~~L~~~~~~k~~El~~L~~--~s~~dlW~~---DLd~fee~~ 1208 (1506)
T PTZ00108 1171 VEDLLAQHKEKEKELEILKN--ITVETMWLK---DIEKVEEAI 1208 (1506)
T ss_pred HHHHHHHHHHHHHHHHHHHC--CCHHHHHHH---HHHHHHHHH
T ss_conf 99999999999999999976--898999999---999999999