HHsearch results for GI: 254780353 and protein with PDBid: 1zvt_A

>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 1.70A {Escherichia coli}
Probab=100.00  E-value=2.4e-43  Score=343.81  Aligned_cols=232  Identities=25%  Similarity=0.477  Sum_probs=202.7

Q ss_pred             CCCEEEEECCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEEHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             67059987101020256554455322345555540121111478178980688278755112121234444222235767
Q gi|254780353|r  518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN  597 (753)
Q Consensus       518 E~v~V~LS~~GyIKr~k~~~~~~~~~~~KegD~l~~~~~~~t~d~LLffTs~GkvY~l~a~~Ips~~~kG~pI~~ll~l~  597 (753)
                      |||+|+||++||||++++|+.+.+++++|+||++.+++.|+|||+|||||+.|++|++++|+||+++++|+|+.+++.++
T Consensus         2 E~vtV~lS~~G~Ir~~kg~~~~~~~~~~Ke~D~~~~~~~~~t~d~ll~FTn~G~~y~~~v~~ip~~~~~~~~~~~~~~~~   81 (256)
T 1zvt_A            2 EPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP   81 (256)
T ss_dssp             CEEEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred             CCEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             89799992897388004888881217457888116999985898899994898799997600411124567844434344


Q ss_pred             CCCEEEEEEEECCCCEEEEEECCCCEEEEEHHHHHCCCCCCEEEEEECCCCCEEEEEECCC--CEEEEEECCCCEEEEEH
Q ss_conf             6530789998579985999974897899638874023335627885368980568896189--80999956993899557
Q gi|254780353|r  598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSI  675 (753)
Q Consensus       598 ~~EkIv~~~~~~~~~~lll~Tk~G~ikr~~l~~~~~~~k~Gk~~ikLk~~D~li~v~~~~~--d~iiliT~~Gk~LrF~~  675 (753)
                      .++.++.+..++++.+++++|++|++||+++++|.+.+++|+.+++++++|+++.+..+.+  ++++++|++|++|||+.
T Consensus        82 ~~~~~i~~~~~~~~~~ll~~T~~G~ikr~~l~~~~~~~~~Gk~~~~l~~~d~~i~~~~v~~~~~~i~l~t~~G~~l~f~~  161 (256)
T 1zvt_A           82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPV  161 (256)
T ss_dssp             TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEG
T ss_pred             CCCCEEEEEEECCCCEEEEEECCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEH
T ss_conf             45531345540688429999689779998725500502357500225778832555996488549999868992898566


Q ss_pred             HHCCCCCHHHCCEEEECCC------CCEEEEEEEECCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8778336121413342187------8756899973388836999417756645114322544413666027552677686
Q gi|254780353|r  676 DQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK  749 (753)
Q Consensus       676 ~eIr~~gRgkGVk~i~Lkd------~~~~~~~~~~~~e~~~il~~t~~g~~k~~~~~~~~~~~RggkG~~~~k~~~K~gk  749 (753)
                      +++|.++||+||++|++++      ++.+..+.+...+...++...+++...+..++++|+++||++|++ ++.+.|.++
T Consensus       162 ~ev~~~~rg~Gv~~~~l~~~~~~~~dd~v~~~~v~~~~~~l~v~~~~~~~~~k~~~l~~~~~~R~~kG~~-~~~~~ki~~  240 (256)
T 1zvt_A          162 SDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTL-MRGLQRIDR  240 (256)
T ss_dssp             GGSCBCSSBSCEESSCCCHHHHHTTSSCEEEEEEEC-CCEEEEEETTEEEEECHHHHHTTBCCTTSCCEE-CTTCCSCCE
T ss_pred             HHCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEECCHHHHHHHHHHCCCCCCC-CCCCCCCCE
T ss_conf             8844245888842471064224567747999888589976999989950532899989986542358877-777724772


Q ss_pred             E
Q ss_conf             1
Q gi|254780353|r  750 F  750 (753)
Q Consensus       750 l  750 (753)
                      +
T Consensus       241 ~  241 (256)
T 1zvt_A          241 V  241 (256)
T ss_dssp             E
T ss_pred             E
T ss_conf             8